Small subunit processome component 20 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1101300.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0136151 |
| rosa_laevigata | RLG00000019700 |
| rosa_multiflora | Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420 |
| rosa_samantha | Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 484 |
| AcsI | RAATTY | 1 cut(s) | 424 |
| AcuI | CTGAAG | 1 cut(s) | 315 |
| AgsI | TTSAA | 3 cut(s) | 69, 222, 464 |
| AluBI | AGCT | 2 cut(s) | 190, 299 |
| AluI | AGCT | 2 cut(s) | 190, 299 |
| AoxI | GGCC | 2 cut(s) | 271, 484 |
| ApoI | RAATTY | 1 cut(s) | 424 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 426 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AsuII | TTCGAA | 1 cut(s) | 361 |
| BalI | TGGCCA | 1 cut(s) | 486 |
| BccI | CCATC | 1 cut(s) | 262 |
| BclI | TGATCA | 2 cut(s) | 393, 475 |
| BfaI | CTAG | 2 cut(s) | 150, 258 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmsI | GCATC | 1 cut(s) | 476 |
| Bpu14I | TTCGAA | 1 cut(s) | 361 |
| BsaBI | GATNNNNATC | 1 cut(s) | 332 |
| Bse1I | ACTGG | 2 cut(s) | 350, 451 |
| Bse3DI | GCAATG | 1 cut(s) | 452 |
| Bse8I | GATNNNNATC | 1 cut(s) | 332 |
| BseGI | GGATG | 2 cut(s) | 16, 330 |
| BseJI | GATNNNNATC | 1 cut(s) | 332 |
| BseMI | GCAATG | 1 cut(s) | 452 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseNI | ACTGG | 2 cut(s) | 350, 451 |
| BseRI | GAGGAG | 1 cut(s) | 204 |
| BshFI | GGCC | 2 cut(s) | 273, 486 |
| BsnI | GGCC | 2 cut(s) | 273, 486 |
| Bsp119I | TTCGAA | 1 cut(s) | 361 |
| Bsp143I | GATC | 2 cut(s) | 393, 475 |
| BspANI | GGCC | 2 cut(s) | 273, 486 |
| BspCNI | CTCAG | 1 cut(s) | 59 |
| BspT104I | TTCGAA | 1 cut(s) | 361 |
| BsrDI | GCAATG | 1 cut(s) | 452 |
| BsrI | ACTGG | 2 cut(s) | 350, 451 |
| BssMI | GATC | 2 cut(s) | 393, 475 |
| Bst4CI | ACNGT | 1 cut(s) | 499 |
| BstBI | TTCGAA | 1 cut(s) | 361 |
| BstDEI | CTNAG | 1 cut(s) | 46 |
| BstF5I | GGATG | 2 cut(s) | 16, 330 |
| BstKTI | GATC | 2 cut(s) | 396, 478 |
| BstMBI | GATC | 2 cut(s) | 393, 475 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 407 |
| BsuRI | GGCC | 2 cut(s) | 273, 486 |
| BtgZI | GCGATG | 1 cut(s) | 123 |
| BtsCI | GGATG | 2 cut(s) | 16, 330 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 499, 534 |
| CviAII | CATG | 1 cut(s) | 158 |
| CviJI | RGCY | 7 cut(s) | 5, 115, 190, 273, 299, 399, 486 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 115, 190, 273, 299, 399, 486 |
| DdeI | CTNAG | 1 cut(s) | 46 |
| DpnI | GATC | 2 cut(s) | 395, 477 |
| DpnII | GATC | 2 cut(s) | 393, 475 |
| DraI | TTTAAA | 1 cut(s) | 18 |
| EaeI | YGGCCR | 1 cut(s) | 484 |
| Eco57I | CTGAAG | 1 cut(s) | 315 |
| FaeI | CATG | 1 cut(s) | 161 |
| FaiI | YATR | 4 cut(s) | 8, 159, 342, 418 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 288, 320 |
| FatI | CATG | 1 cut(s) | 157 |
| FbaI | TGATCA | 2 cut(s) | 393, 475 |
| FokI | GGATG | 2 cut(s) | 23, 337 |
| FspBI | CTAG | 2 cut(s) | 150, 258 |
| HaeIII | GGCC | 2 cut(s) | 273, 486 |
| Hin1II | CATG | 1 cut(s) | 161 |
| HincII | GTYRAC | 1 cut(s) | 210 |
| HindII | GTYRAC | 1 cut(s) | 210 |
| HindIII | AAGCTT | 1 cut(s) | 297 |
| HinfI | GANTC | 2 cut(s) | 58, 206 |
| Hpy166II | GTNNAC | 1 cut(s) | 210 |
| Hpy188I | TCNGA | 6 cut(s) | 49, 95, 123, 295, 376, 393 |
| Hpy188III | TCNNGA | 1 cut(s) | 258 |
| Hpy8I | GTNNAC | 1 cut(s) | 210 |
| HpyCH4III | ACNGT | 1 cut(s) | 499 |
| HpyCH4V | TGCA | 1 cut(s) | 386 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 46 |
| Hsp92II | CATG | 1 cut(s) | 161 |
| Ksp22I | TGATCA | 2 cut(s) | 393, 475 |
| Kzo9I | GATC | 2 cut(s) | 393, 475 |
| LpnPI | CCDG | 7 cut(s) | 129, 244, 267, 331, 381, 464, 519 |
| LweI | GCATC | 1 cut(s) | 476 |
| MaeI | CTAG | 2 cut(s) | 150, 258 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MalI | GATC | 2 cut(s) | 395, 477 |
| MboI | GATC | 2 cut(s) | 393, 475 |
| MboII | GAAGA | 4 cut(s) | 185, 296, 328, 350 |
| MlsI | TGGCCA | 1 cut(s) | 486 |
| MluCI | AATT | 3 cut(s) | 34, 222, 424 |
| MluNI | TGGCCA | 1 cut(s) | 486 |
| MlyI | GAGTC | 1 cut(s) | 215 |
| MmeI | TCCRAC | 1 cut(s) | 531 |
| MnlI | CCTC | 3 cut(s) | 47, 225, 284 |
| Mox20I | TGGCCA | 1 cut(s) | 486 |
| MroXI | GAANNNNTTC | 1 cut(s) | 426 |
| MscI | TGGCCA | 1 cut(s) | 486 |
| MseI | TTAA | 3 cut(s) | 17, 101, 177 |
| Msp20I | TGGCCA | 1 cut(s) | 486 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 2 cut(s) | 393, 475 |
| NlaIII | CATG | 1 cut(s) | 161 |
| NspV | TTCGAA | 1 cut(s) | 361 |
| PdmI | GAANNNNTTC | 1 cut(s) | 426 |
| PfeI | GAWTC | 1 cut(s) | 58 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| SaqAI | TTAA | 3 cut(s) | 17, 101, 177 |
| Sau3AI | GATC | 2 cut(s) | 393, 475 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| SchI | GAGTC | 1 cut(s) | 215 |
| SetI | ASST | 2 cut(s) | 192, 301 |
| SfaNI | GCATC | 1 cut(s) | 476 |
| SfuI | TTCGAA | 1 cut(s) | 361 |
| Sse9I | AATT | 3 cut(s) | 34, 222, 424 |
| SspI | AATATT | 1 cut(s) | 81 |
| SspMI | CTAG | 2 cut(s) | 150, 258 |
| TaaI | ACNGT | 1 cut(s) | 499 |
| TaqI | TCGA | 3 cut(s) | 162, 204, 361 |
| TasI | AATT | 3 cut(s) | 34, 222, 424 |
| TfiI | GAWTC | 1 cut(s) | 58 |
| Tru1I | TTAA | 3 cut(s) | 17, 101, 177 |
| Tru9I | TTAA | 3 cut(s) | 17, 101, 177 |
| TspDTI | ATGAA | 1 cut(s) | 146 |
| XapI | RAATTY | 1 cut(s) | 424 |
| XbaI | TCTAGA | 1 cut(s) | 257 |
| XmnI | GAANNNNTTC | 1 cut(s) | 426 |
| XspI | CTAG | 2 cut(s) | 150, 258 |