Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010188.1

Orthogroup ID

OG0014821

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2022

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

tcttgctcactgaagaactcatcttggctgcacaccagttgccaaccaattaatgccgtggctgcccaagaggctcaatcctcagcctcaggtgataggcaggctctgatatctttctcagtcgcactgagatcgtcacaatcctcgtcaaggctcagacaatcactatttcggagcaggatcttctcaacccgaacccggatcctcaccaccttcgacttcctcccagaggaagatgacaagtggggcggtcaggtttctcagtggaatgctgagattgcccactacaatgaaacaagggaaaaagagttacctcttgttcaggaggtagattccaaagtcaaagaattgcgccaaaccatatcagaccttaaccttgatcaagtggaactgagaacttctattaggaagttaaagaagaaagcttcacagaaattgcttaagcagcaggaactttatcggagcaagcttttatcatcatacgaggacatggtgtctgttgtaactaatatggtcaaaactagtagatccatgagatgctttgtcaaagggtcagccaatagtccatttttacaattttctggctattccgaatgtaataatgaccccggagatggtggtgggaaaggtgaacaaaagcatagacaaattcaattttgtggtaatgttctgcaggaaaggaaagttactgagctggatgacagagtgaccactgtgctcggtcatgaatgggagcagtggaggatttttggaggggtatgctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.97

Weight (kDa)

8.95

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014821)

Species	Orthologous Gene IDs
malus_domestica	MD07G1101300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0136151
rosa_laevigata	RLG00000019700
rosa_multiflora	Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420
rosa_samantha	Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	4 cut(s)	188, 196, 209, 522
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	4 cut(s)	150, 198, 229, 614
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	653
AhdI	GACNNNNNGTC	1 cut(s)	493
AhlI	ACTAGT	1 cut(s)	521
AluBI	AGCT	3 cut(s)	425, 469, 694
AluI	AGCT	3 cut(s)	425, 469, 694
Alw21I	GWGCWC	1 cut(s)	720
AlwI	GGATC	4 cut(s)	188, 196, 209, 522
AlwNI	CAGNNNCTG	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	28, 62, 445, 762
ApoI	RAATTY	1 cut(s)	648
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	354
AsuC2I	CCSGG	2 cut(s)	199, 609
AsuHPI	GGTGA	3 cut(s)	104, 199, 641
AxyI	CCTNAGG	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	15, 49, 457, 749
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	199, 609
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	671
BfrI	CTTAAG	1 cut(s)	440
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	4 cut(s)	29, 63, 446, 763
BlsI	GCNGC	4 cut(s)	30, 64, 447, 764
Bme1390I	CCNGG	2 cut(s)	199, 609
BmeRI	GACNNNNNGTC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	2 cut(s)	199, 609
BmsI	GCATC	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	82
BpuMI	CCSGG	2 cut(s)	199, 609
BsaJI	CCNNGG	2 cut(s)	57, 607
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 198, 229, 614
Bse1I	ACTGG	1 cut(s)	36
Bse21I	CCTNAGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	57, 607
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	4 cut(s)	150, 198, 229, 614
BseMII	CTCAG	9 cut(s)	96, 102, 119, 132, 169, 264, 275, 383, 681
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	15, 49, 457, 749
BsgI	GTGCAG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	199, 609
BslI	CCNNNNNNNGG	4 cut(s)	150, 198, 229, 614
BsmI	GAATGC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	5 cut(s)	131, 180, 201, 379, 527
BspACI	CCGC	1 cut(s)	249
BspCNI	CTCAG	9 cut(s)	95, 101, 120, 131, 168, 265, 274, 384, 682
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	203
BspMAI	CTGCAG	1 cut(s)	675
BspPI	GGATC	4 cut(s)	188, 196, 209, 522
BspTI	CTTAAG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	57, 607
BssMI	GATC	5 cut(s)	131, 180, 201, 379, 527
Bst4CI	ACNGT	1 cut(s)	715
BstAFI	CTTAAG	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	102, 467
BstDEI	CTNAG	9 cut(s)	82, 88, 118, 128, 155, 261, 273, 392, 690
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	2 cut(s)	148, 227
BstF5I	GGATG	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	5 cut(s)	134, 183, 204, 382, 530
BstMBI	GATC	5 cut(s)	131, 180, 201, 379, 527
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 71, 278, 445
BstSCI	CCNGG	2 cut(s)	197, 607
BstSFI	CTRYAG	1 cut(s)	671
BstV1I	GCAGC	4 cut(s)	15, 49, 457, 749
BstX2I	RGATCY	3 cut(s)	180, 201, 527
BstYI	RGATCY	3 cut(s)	180, 201, 527
Bsu36I	CCTNAGG	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	743
BtsIMutI	CAGTG	5 cut(s)	8, 125, 269, 711, 743
Cac8I	GCNNGC	2 cut(s)	102, 467
CaiI	CAGNNNCTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	1 cut(s)	354
CviAII	CATG	3 cut(s)	490, 532, 725
DdeI	CTNAG	9 cut(s)	82, 88, 118, 128, 155, 261, 273, 392, 690
DpnI	GATC	5 cut(s)	133, 182, 203, 381, 529
DpnII	GATC	5 cut(s)	131, 180, 201, 379, 527
DriI	GACNNNNNGTC	1 cut(s)	493
Eam1105I	GACNNNNNGTC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	88
EcoNI	CCTNNNNNAGG	2 cut(s)	148, 227
EcoRV	GATATC	1 cut(s)	111
FaeI	CATG	3 cut(s)	493, 535, 728
FaiI	YATR	8 cut(s)	362, 481, 491, 512, 533, 642, 726, 760
FatI	CATG	3 cut(s)	489, 531, 724
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	29, 63, 446, 763
FokI	GGATG	1 cut(s)	710
Fsp4HI	GCNGC	4 cut(s)	29, 63, 446, 763
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	4 cut(s)	29, 63, 446, 763
HapII	CCGG	2 cut(s)	199, 609
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	493, 535, 728
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HindIII	AAGCTT	2 cut(s)	423, 467
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	199, 609
HphI	GGTGA	3 cut(s)	104, 199, 641
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	6 cut(s)	108, 158, 174, 367, 462, 592
Hpy188III	TCNNGA	2 cut(s)	323, 725
Hpy8I	GTNNAC	1 cut(s)	632
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4V	TGCA	2 cut(s)	31, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 71, 278, 445
HpyF3I	CTNAG	9 cut(s)	82, 88, 118, 128, 155, 261, 273, 392, 690
Hsp92II	CATG	3 cut(s)	493, 535, 728
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	131, 180, 201, 379, 527
LmnI	GCTCC	3 cut(s)	174, 462, 733
Lsp1109I	GCAGC	4 cut(s)	15, 49, 457, 749
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	5 cut(s)	135, 309, 502, 685, 706
MalI	GATC	5 cut(s)	133, 182, 203, 381, 529
MboI	GATC	5 cut(s)	131, 180, 201, 379, 527
MboII	GAAGA	4 cut(s)	25, 175, 245, 430
MflI	RGATCY	3 cut(s)	180, 201, 527
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	6 cut(s)	48, 347, 434, 575, 648, 653
MseI	TTAA	4 cut(s)	51, 372, 413, 441
MslI	CAYNNNNRTG	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	2 cut(s)	199, 609
MspR9I	CCNGG	2 cut(s)	199, 609
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	4 cut(s)	62, 71, 278, 445
NciI	CCSGG	2 cut(s)	199, 609
NdeII	GATC	5 cut(s)	131, 180, 201, 379, 527
NlaIII	CATG	3 cut(s)	493, 535, 728
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	2 cut(s)	135, 706
PagI	TCATGA	1 cut(s)	724
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	30, 64, 447, 764
PshBI	ATTAAT	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	3 cut(s)	180, 201, 527
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	51, 372, 413, 441
SatI	GCNGC	4 cut(s)	29, 63, 446, 763
Sau3AI	GATC	5 cut(s)	131, 180, 201, 379, 527
ScrFI	CCNGG	2 cut(s)	199, 609
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	6 cut(s)	48, 347, 434, 575, 648, 653
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	197, 607
TaaI	ACNGT	1 cut(s)	715
TaqI	TCGA	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	6 cut(s)	48, 347, 434, 575, 648, 653
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	4 cut(s)	51, 372, 413, 441
Tru9I	TTAA	4 cut(s)	51, 372, 413, 441
TscAI	CASTG	5 cut(s)	15, 132, 269, 718, 743
TseFI	GTSAC	2 cut(s)	135, 706
TseI	GCWGC	4 cut(s)	28, 62, 445, 762
Tsp45I	GTSAC	2 cut(s)	135, 706
TspDTI	ATGAA	2 cut(s)	306, 741
TspRI	CASTG	5 cut(s)	15, 132, 269, 718, 743
Vha464I	CTTAAG	1 cut(s)	440
VspI	ATTAAT	1 cut(s)	51
XagI	CCTNNNNNAGG	2 cut(s)	148, 227
XapI	RAATTY	1 cut(s)	648
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.