Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002070.1

Orthogroup ID

OG0014821

Physical Location & Seq

Genomic Coordinates Reverse (-)

96336 .. 103369

Gene Structure 7034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002070.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

atgggtaactgggatttgaattttgtggtttcagtattggattcgaacattggagatgtggatttgggattgaaggaaaaaatgtcaaaattggggctaggaagtgaaggggagggtcttgcaagttccaccagtgttcaggcatcgtttgtaagaggtgttcttgagaaaactggagttgagccacaagtggagaggattagtaaatacgaaggtgctgctttgcggcaaaaattagacactttgaggctgtggttatatctaagtggggattttgagttcaggcctcatccaaatgaatgttctggaagtgatcttgatggagatatttactttgtttgctgggaccccgagttgatttctcgcaatcaaatccaacctatggattataccccagcaccaactataaagatggatcatgatgtcacaattgagtgcccagtttacttctttattaatcggatgcaattgcatgctctgttttcatactccaaagttgcatcaaagtacccttcaaggctgctggcatgctgtcgacatgctgccgccatgctgccgagcccttcatacgacgaagaagatgttatatgtctgttactcatcttctgtgaaagagtgcaaatgggagtgcaaagctttaagttactagatggatcacctgaactgtcaaggatccaatgttttctgagtggcacggtcagtaattgggttgggcttttaaagggtgtcgagaatggggatttatcatctacttcaattcatgaagctgacttggccctgctgtggggaagcattaactgctttctgcaaatagtagattcccaagaaggtccatccttgttattcgatttgacagatgcaatcgatcaacccctgatgattgaagatgatatggctatggattctttaaagatgtttgctgacaaaatgtgccactcagacggagggattcgtgcttcaactattagaatattatgccactttggaactttaagttgcgatgagccagttctgaaaaagatgaaaactgaactttctcctagttctcatgtcgataacaaagactttaatgttattcagcttcttctgtcaatcgagtcaactcctctttcaatttctaccagcagaaaagttacactattgatttctagaatacagatgggcctctctgctggaaaaatatctgaagcttatcttccccttgttgtaaatgggatgattggtatcttccataaccggtttagtcatcttcgaaatcctgtatcagagtgccttgcagttctgatcagccaaagtaatggacttgtatgggaaaattttcacaactattttgagcaatgccagtctgtatttcaagcatctattgatcaagttggccaagttgatactgtgctgtccaacaagtcaagtgttatccatttgagagagactgagagagagagagagagaggggtaggcggcggtgcagttcaacccgatctcaagcccatcctcctcctcctccgatctcaagacccggcggtgcagttcaacccgatctcaagcccatcctcctcctcctccgatctcaagacccgtcctccttctccgcctacagttcaacccccatcctcctccgatcgctgcagttcaacaacccatcctccttctccggtaaagccctcctcctccgatctggccacccatcctcctcctcctccgatctcaagacccatcctccttctccgcctacagttcaacccgatctcaagcccatcctcctcctcctccgatctcaagacccgtcctccttctcctccgatctcaagacccgtcctccttctccgcctacagttcaacccccatcctcctccgatcgctgcagttcaacccgtctgcagttcacacatcgagacccatcctccttcgccgttttgcttctgggtagcatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRIM

Protein Analysis

644

Amino Acids

70.83

Weight (kDa)

5.54

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014821)

Species	Orthologous Gene IDs
malus_domestica	MD07G1101300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0136151
rosa_laevigata	RLG00000019700
rosa_multiflora	Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420
rosa_samantha	Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	8 cut(s)	226, 546, 1458, 1461, 1520, 1589, 1726, 1825
AclWI	GGATC	4 cut(s)	423, 661, 667, 680
AcoI	YGGCCR	2 cut(s)	1375, 1677
AcsI	RAATTY	2 cut(s)	19, 1315
AcuI	CTGAAG	1 cut(s)	1206
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	3 cut(s)	382, 783, 784
AgeI	ACCGGT	1 cut(s)	1236
AjuI	GAANNNNNNNTTGG	2 cut(s)	286, 318
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	4 cut(s)	636, 767, 1081, 1190
AluI	AGCT	4 cut(s)	636, 767, 1081, 1190
Alw26I	GTCTC	2 cut(s)	1421, 1886
AlwI	GGATC	4 cut(s)	423, 661, 667, 680
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	5 cut(s)	284, 774, 1162, 1375, 1677
ApeKI	GCWGC	6 cut(s)	218, 520, 542, 553, 1623, 1859
ApoI	RAATTY	2 cut(s)	19, 1315
AseI	ATTAAT	1 cut(s)	456
AsiGI	ACCGGT	1 cut(s)	1236
Asp700I	GAANNNNTTC	1 cut(s)	1317
AspS9I	GGNCC	4 cut(s)	346, 775, 830, 1162
AsuC2I	CCSGG	1 cut(s)	1517
AsuHPI	GGTGA	1 cut(s)	648
AsuII	TTCGAA	2 cut(s)	44, 1252
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	346, 830
BaeGI	GKGCMC	1 cut(s)	440
BalI	TGGCCA	2 cut(s)	1377, 1679
BamHI	GGATCC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	563
BbvI	GCAGC	6 cut(s)	205, 507, 529, 540, 1610, 1846
BceAI	ACGGC	1 cut(s)	1894
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BclI	TGATCA	2 cut(s)	1284, 1366
BcnI	CCSGG	1 cut(s)	1517
BcoDI	GTCTC	2 cut(s)	1421, 1886
BfaI	CTAG	4 cut(s)	98, 647, 1041, 1149
BfmI	CTRYAG	6 cut(s)	1593, 1624, 1730, 1829, 1860, 1876
BisI	GCNGC	9 cut(s)	219, 227, 521, 543, 546, 554, 1459, 1624, 1860
BlsI	GCNGC	9 cut(s)	220, 228, 522, 544, 547, 555, 1460, 1625, 1861
Bme1390I	CCNGG	1 cut(s)	1517
Bme18I	GGWCC	2 cut(s)	346, 830
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	4 cut(s)	346, 775, 830, 1162
BmiI	GGNNCC	3 cut(s)	347, 348, 674
BmrFI	CCNGG	1 cut(s)	1517
BmrI	ACTGGG	2 cut(s)	19, 434
BmsI	GCATC	5 cut(s)	152, 453, 509, 847, 1367
BmuI	ACTGGG	2 cut(s)	19, 434
BpmI	CTGGAG	1 cut(s)	195
Bpu14I	TTCGAA	2 cut(s)	44, 1252
BpuEI	CTTGAG	9 cut(s)	185, 1466, 1494, 1525, 1553, 1690, 1732, 1760, 1789
BpuMI	CCSGG	1 cut(s)	1517
Bsa29I	ATCGAT	1 cut(s)	864
BsaBI	GATNNNNATC	1 cut(s)	1223
BsaI	GGTCTC	1 cut(s)	1886
BsaWI	WCCGGW	2 cut(s)	1236, 1651
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 783, 784
Bse118I	RCCGGY	1 cut(s)	1236
Bse1I	ACTGG	6 cut(s)	14, 132, 178, 440, 1007, 1342
Bse3DI	GCAATG	1 cut(s)	1343
Bse8I	GATNNNNATC	1 cut(s)	1223
BseCI	ATCGAT	1 cut(s)	864
BseJI	GATNNNNATC	1 cut(s)	1223
BseLI	CCNNNNNNNGG	3 cut(s)	382, 783, 784
BseMI	GCAATG	1 cut(s)	1343
BseMII	CTCAG	3 cut(s)	677, 951, 1422
BseNI	ACTGG	6 cut(s)	14, 132, 178, 440, 1007, 1342
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	6 cut(s)	205, 507, 529, 540, 1610, 1846
BseYI	CCCAGC	2 cut(s)	342, 394
BsgI	GTGCAG	2 cut(s)	1485, 1544
Bsh1285I	CGRYCG	2 cut(s)	1621, 1857
BshFI	GGCC	5 cut(s)	286, 776, 1164, 1377, 1679
BshTI	ACCGGT	1 cut(s)	1236
BshVI	ATCGAT	1 cut(s)	864
BsiEI	CGRYCG	2 cut(s)	1621, 1857
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	1237, 1517, 1652
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	3 cut(s)	382, 783, 784
BsmAI	GTCTC	2 cut(s)	1421, 1886
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	5 cut(s)	286, 776, 1164, 1377, 1679
Bso31I	GGTCTC	1 cut(s)	1886
BsoBI	CYCGRG	1 cut(s)	350
Bsp119I	TTCGAA	2 cut(s)	44, 1252
Bsp1286I	GDGCHC	2 cut(s)	440, 563
BspACI	CCGC	8 cut(s)	226, 546, 1458, 1461, 1520, 1589, 1726, 1825
BspANI	GGCC	5 cut(s)	286, 776, 1164, 1377, 1679
BspCNI	CTCAG	3 cut(s)	678, 950, 1423
BspDI	ATCGAT	1 cut(s)	864
BspHI	TCATGA	3 cut(s)	418, 760, 1931
BspLI	GGNNCC	3 cut(s)	347, 348, 674
BspMAI	CTGCAG	3 cut(s)	1628, 1864, 1880
BspPI	GGATC	4 cut(s)	423, 661, 667, 680
BspT104I	TTCGAA	2 cut(s)	44, 1252
BspTNI	GGTCTC	1 cut(s)	1886
BsrDI	GCAATG	1 cut(s)	1343
BsrFI	RCCGGY	1 cut(s)	1236
BsrI	ACTGG	6 cut(s)	14, 132, 178, 440, 1007, 1342
BssAI	RCCGGY	1 cut(s)	1236
Bst4CI	ACNGT	6 cut(s)	666, 697, 1390, 1597, 1734, 1833
BstAPI	GCANNNNNTGC	1 cut(s)	798
BstBI	TTCGAA	2 cut(s)	44, 1252
BstC8I	GCNNGC	3 cut(s)	474, 525, 529
BstDEI	CTNAG	4 cut(s)	263, 686, 937, 1431
BstMAI	GTCTC	2 cut(s)	1421, 1886
BstMCI	CGRYCG	2 cut(s)	1621, 1857
BstMWI	GCNNNNNNNGC	2 cut(s)	773, 798
BstNSI	RCATGY	3 cut(s)	476, 531, 542
BstSCI	CCNGG	1 cut(s)	1515
BstSFI	CTRYAG	6 cut(s)	1593, 1624, 1730, 1829, 1860, 1876
BstSLI	GKGCMC	1 cut(s)	440
BstV1I	GCAGC	6 cut(s)	205, 507, 529, 540, 1610, 1846
BstX2I	RGATCY	1 cut(s)	672
BstXI	CCANNNNNNTGG	1 cut(s)	1298
BstYI	RGATCY	1 cut(s)	672
Bsu15I	ATCGAT	1 cut(s)	864
BsuRI	GGCC	5 cut(s)	286, 776, 1164, 1377, 1679
BsuTUI	ATCGAT	1 cut(s)	864
BtgZI	GCGATG	1 cut(s)	1014
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	3 cut(s)	474, 525, 529
CciI	TCATGA	3 cut(s)	418, 760, 1931
Cfr10I	RCCGGY	1 cut(s)	1236
Cfr13I	GGNCC	4 cut(s)	346, 775, 830, 1162
ClaI	ATCGAT	1 cut(s)	864
Csp6I	GTAC	1 cut(s)	508
CspAI	ACCGGT	1 cut(s)	1236
CviAII	CATG	8 cut(s)	419, 473, 528, 539, 550, 761, 1049, 1932
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	4 cut(s)	263, 686, 937, 1431
DraI	TTTAAA	2 cut(s)	720, 909
EaeI	YGGCCR	2 cut(s)	1375, 1677
EciI	GGCGGA	3 cut(s)	1578, 1715, 1814
Eco147I	AGGCCT	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	1886
Eco47I	GGWCC	2 cut(s)	346, 830
Eco57I	CTGAAG	1 cut(s)	1206
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	8 cut(s)	422, 476, 531, 542, 553, 764, 1052, 1935
FalI	AAGNNNNNCTT	2 cut(s)	1179, 1211
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	8 cut(s)	418, 472, 527, 538, 549, 760, 1048, 1931
FbaI	TGATCA	2 cut(s)	1284, 1366
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	9 cut(s)	219, 227, 521, 543, 546, 554, 1459, 1624, 1860
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	9 cut(s)	219, 227, 521, 543, 546, 554, 1459, 1624, 1860
FspBI	CTAG	4 cut(s)	98, 647, 1041, 1149
GluI	GCNGC	9 cut(s)	219, 227, 521, 543, 546, 554, 1459, 1624, 1860
GsaI	CCCAGC	2 cut(s)	346, 398
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	5 cut(s)	286, 776, 1164, 1377, 1679
HapII	CCGG	3 cut(s)	1237, 1517, 1652
Hin1II	CATG	8 cut(s)	422, 476, 531, 542, 553, 764, 1052, 1935
HincII	GTYRAC	2 cut(s)	536, 1101
HindII	GTYRAC	2 cut(s)	536, 1101
HindIII	AAGCTT	2 cut(s)	634, 1188
HinfI	GANTC	5 cut(s)	41, 818, 902, 949, 1097
HpaII	CCGG	3 cut(s)	1237, 1517, 1652
HphI	GGTGA	1 cut(s)	648
Hpy166II	GTNNAC	4 cut(s)	445, 536, 1101, 1883
Hpy8I	GTNNAC	4 cut(s)	445, 536, 1101, 1883
Hpy99I	CGWCG	1 cut(s)	575
HpyCH4III	ACNGT	6 cut(s)	666, 697, 1390, 1597, 1734, 1833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	773, 798
HpyF3I	CTNAG	4 cut(s)	263, 686, 937, 1431
Hsp92II	CATG	8 cut(s)	422, 476, 531, 542, 553, 764, 1052, 1935
KflI	GGGWCCC	1 cut(s)	346
Ksp22I	TGATCA	2 cut(s)	1284, 1366
Lsp1109I	GCAGC	6 cut(s)	205, 507, 529, 540, 1610, 1846
LweI	GCATC	5 cut(s)	152, 453, 509, 847, 1367
MaeI	CTAG	4 cut(s)	98, 647, 1041, 1149
MaeIII	GTNAC	5 cut(s)	5, 424, 594, 642, 1132
MboII	GAAGA	8 cut(s)	587, 590, 595, 896, 1076, 1187, 1219, 1241
MfeI	CAATTG	2 cut(s)	429, 467
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	2 cut(s)	440, 563
MlsI	TGGCCA	2 cut(s)	1377, 1679
MluCI	AATT	9 cut(s)	19, 89, 233, 429, 467, 703, 756, 1113, 1315
MluNI	TGGCCA	2 cut(s)	1377, 1679
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	2 cut(s)	400, 1422
Mox20I	TGGCCA	2 cut(s)	1377, 1679
MroXI	GAANNNNTTC	1 cut(s)	1317
MscI	TGGCCA	2 cut(s)	1377, 1679
MseI	TTAA	7 cut(s)	456, 639, 719, 795, 908, 992, 1068
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	2 cut(s)	1377, 1679
MspI	CCGG	3 cut(s)	1237, 1517, 1652
MspR9I	CCNGG	1 cut(s)	1517
MunI	CAATTG	2 cut(s)	429, 467
MwoI	GCNNNNNNNGC	2 cut(s)	773, 798
NciI	CCSGG	1 cut(s)	1517
NlaIII	CATG	8 cut(s)	422, 476, 531, 542, 553, 764, 1052, 1935
NlaIV	GGNNCC	3 cut(s)	347, 348, 674
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	3 cut(s)	476, 531, 542
NspV	TTCGAA	2 cut(s)	44, 1252
PaeI	GCATGC	2 cut(s)	476, 531
PagI	TCATGA	3 cut(s)	418, 760, 1931
PceI	AGGCCT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	1317
PfeI	GAWTC	4 cut(s)	41, 818, 902, 949
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	1236
PkrI	GCNGC	9 cut(s)	220, 228, 522, 544, 547, 555, 1460, 1625, 1861
Ple19I	CGATCG	2 cut(s)	1621, 1857
PleI	GAGTC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	1105
PpuMI	RGGWCCY	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	346
PspFI	CCCAGC	2 cut(s)	342, 394
PspN4I	GGNNCC	3 cut(s)	347, 348, 674
PspPI	GGNCC	4 cut(s)	346, 775, 830, 1162
PspPPI	RGGWCCY	1 cut(s)	346
PsrI	GAACNNNNNNTAC	2 cut(s)	144, 176
PstI	CTGCAG	3 cut(s)	1628, 1864, 1880
PsuI	RGATCY	1 cut(s)	672
PvuI	CGATCG	2 cut(s)	1621, 1857
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	534
SaqAI	TTAA	7 cut(s)	456, 639, 719, 795, 908, 992, 1068
SatI	GCNGC	9 cut(s)	219, 227, 521, 543, 546, 554, 1459, 1624, 1860
Sau96I	GGNCC	4 cut(s)	346, 775, 830, 1162
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	1 cut(s)	1517
SduI	GDGCHC	2 cut(s)	440, 563
SetI	ASST	9 cut(s)	160, 217, 382, 638, 661, 769, 832, 1083, 1192
SfaNI	GCATC	5 cut(s)	152, 453, 509, 847, 1367
SfcI	CTRYAG	6 cut(s)	1593, 1624, 1730, 1829, 1860, 1876
SfuI	TTCGAA	2 cut(s)	44, 1252
SinI	GGWCC	2 cut(s)	346, 830
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	9 cut(s)	164, 1481, 1509, 1540, 1568, 1705, 1747, 1775, 1804
SmoI	CTYRAG	9 cut(s)	164, 1481, 1509, 1540, 1568, 1705, 1747, 1775, 1804
SphI	GCATGC	2 cut(s)	476, 531
Sse9I	AATT	9 cut(s)	19, 89, 233, 429, 467, 703, 756, 1113, 1315
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	8 cut(s)	226, 546, 1458, 1461, 1520, 1589, 1726, 1825
SspI	AATATT	1 cut(s)	972
SspMI	CTAG	4 cut(s)	98, 647, 1041, 1149
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	1515
TaaI	ACNGT	6 cut(s)	666, 697, 1390, 1597, 1734, 1833
TaqI	TCGA	9 cut(s)	44, 535, 729, 846, 864, 1053, 1095, 1252, 1890
TasI	AATT	9 cut(s)	19, 89, 233, 429, 467, 703, 756, 1113, 1315
TauI	GCSGC	3 cut(s)	229, 548, 1461
TfiI	GAWTC	4 cut(s)	41, 818, 902, 949
Tru1I	TTAA	7 cut(s)	456, 639, 719, 795, 908, 992, 1068
Tru9I	TTAA	7 cut(s)	456, 639, 719, 795, 908, 992, 1068
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	6 cut(s)	218, 520, 542, 553, 1623, 1859
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	6 cut(s)	312, 474, 555, 749, 777, 1037
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	346, 830
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	2 cut(s)	19, 1315
XbaI	TCTAGA	1 cut(s)	1148
XceI	RCATGY	3 cut(s)	476, 531, 542
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	1317
XspI	CTAG	4 cut(s)	98, 647, 1041, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.