Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014821

Physical Location & Seq

Genomic Coordinates Forward (+)

50434859 .. 50436950

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG371500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCTTGAAATTGGGGTTTTACTTGTGCAGACATATATCATACACTCTGGCATTCAGTTGGGAGAGGAACATTTATCTGAAGTTGTTGATAAGATTTTTCAGTTAATGCTCAGCATTCTTAGCGGACTACACACTTATAATGATTTGTCAACCATCTCTGGCTGTTCGTTGCAATGGGCTCCTGTATTTGATTTACAGAAGTCAAGCTTGTTGGGGTTTATTCAACAACTGCTACAAAAGGATATTTCTATAATAGATACCTTCCGAGTTAACATTTTAAGAGTGCAAAGCTTTAAGTCACTAGATGGATCACCTGAACTGTCAGGGATCCAATGTTTTCTAAGTGGCACGGTCAGTAATTGGGTTGGGGTTTTAAAGGGTGTCGAGAATGGGGATTTATCATCTACTTCAATTCATGAAGCTGACTTGGCCCTGCTGTGGGGAAGCATTAACTGCTTTCCGCAAATAGTAGATTCCCAAGAAGGTCCATCCTTGTTATTCGATTTGACAGATGCAATTGATCAACTCCTGATGATTGAAGATGATATGGCTATGGATGCTTTAAAGATGTTTGCTGACAATTTGTGCCACTCAGACAGAGGGATTCGTGCTTCAACTATTAGAATATTATGCCACTTTGGAACTTTAAGTTGCGATGAGCCAGTTCTGAAAAAGATGAAAACTGAACTTTCTCTTAGTTCTCATGTCGATAACAAAGACTTTAATGTTATTCAGCTTCTTCTGTCAATCGAGTCAACTCCTCTTTCAATTTCTACCAGCAGAAAAGTTACACTATTGATTTCTAGAATACAGATGGGCCTCTCTGCTGGAAAAATATCTGAAGCGTATCTTCCCTTTGTTGTAAATGGGATGATTGGTATCTTCCATAACCGGTTTAGTCATCTTCGAAATCATGTATCAGAGTGCCTTGCAGTTCTGATCAGCCAAAGTAATGGACTTGTATGGGAAAATTTTCTCAACTATTTTGAGCAATGCCAGTCTGTATTTCAAGCATCTATTGATCAAGTTGGCCAAGTTGATACTGTGCTGTCCAACAAGTCAAGTGGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRIM

Protein Analysis

357

Amino Acids

39.43

Weight (kDa)

4.91

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014821)

Species	Orthologous Gene IDs
malus_domestica	MD07G1101300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0136151
rosa_laevigata	RLG00000019700
rosa_multiflora	Rmu_sc0002070.1_g000018 Rmu_sc0010188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032180 Rroxscaffold_2G00114000 Rroxscaffold_2G00149490 Rroxscaffold_3G00257240 Rroxscaffold_5G00344950 Rroxscaffold_5G00350550 Rroxscaffold_6G00396420
rosa_samantha	Rh1AG093900 Rh1DG198000 Rh2BG403000 Rh2BG403100 Rh2CG371500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AciI	CCGC	2 cut(s)	123, 461
AclWI	GGATC	3 cut(s)	316, 322, 335
AcoI	YGGCCR	1 cut(s)	1030
AcsI	RAATTY	1 cut(s)	970
AcuI	CTGAAG	2 cut(s)	99, 861
AfiI	CCNNNNNNNGG	2 cut(s)	438, 439
AgeI	ACCGGT	1 cut(s)	891
AgsI	TTSAA	7 cut(s)	8, 224, 411, 539, 615, 768, 1010
AluBI	AGCT	4 cut(s)	207, 291, 422, 736
AluI	AGCT	4 cut(s)	207, 291, 422, 736
AlwI	GGATC	3 cut(s)	316, 322, 335
AoxI	GGCC	3 cut(s)	429, 817, 1030
ApoI	RAATTY	1 cut(s)	970
AsiGI	ACCGGT	1 cut(s)	891
Asp700I	GAANNNNTTC	1 cut(s)	972
AspS9I	GGNCC	3 cut(s)	430, 485, 817
AsuHPI	GGTGA	1 cut(s)	303
AsuII	TTCGAA	1 cut(s)	907
AvaII	GGWCC	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	1032
BamHI	GGATCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	181
BccI	CCATC	4 cut(s)	161, 299, 496, 808
BclI	TGATCA	3 cut(s)	520, 939, 1021
BfaI	CTAG	2 cut(s)	302, 804
BlpI	GCTNAGC	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	3 cut(s)	430, 485, 817
BmiI	GGNNCC	2 cut(s)	180, 329
BmsI	GCATC	3 cut(s)	502, 547, 1022
Bpu1102I	GCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	907
BsaBI	GATNNNNATC	1 cut(s)	878
BsaWI	WCCGGW	1 cut(s)	891
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 439
Bse118I	RCCGGY	1 cut(s)	891
Bse1I	ACTGG	2 cut(s)	662, 997
Bse3DI	GCAATG	2 cut(s)	179, 998
Bse8I	GATNNNNATC	1 cut(s)	878
BseGI	GGATG	3 cut(s)	488, 562, 876
BseJI	GATNNNNATC	1 cut(s)	878
BseLI	CCNNNNNNNGG	2 cut(s)	438, 439
BseMI	GCAATG	2 cut(s)	179, 998
BseMII	CTCAG	2 cut(s)	124, 606
BseNI	ACTGG	2 cut(s)	662, 997
BseRI	GAGGAG	1 cut(s)	750
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	431, 819, 1032
BshTI	ACCGGT	1 cut(s)	891
BsiSI	CCGG	1 cut(s)	892
BslI	CCNNNNNNNGG	2 cut(s)	438, 439
BsmI	GAATGC	2 cut(s)	51, 114
BsnI	GGCC	3 cut(s)	431, 819, 1032
Bsp119I	TTCGAA	1 cut(s)	907
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	308, 327, 520, 939, 1021
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	123, 461
BspANI	GGCC	3 cut(s)	431, 819, 1032
BspCNI	CTCAG	2 cut(s)	123, 605
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	180, 329
BspPI	GGATC	3 cut(s)	316, 322, 335
BspT104I	TTCGAA	1 cut(s)	907
BsrDI	GCAATG	2 cut(s)	179, 998
BsrFI	RCCGGY	1 cut(s)	891
BsrI	ACTGG	2 cut(s)	662, 997
BssAI	RCCGGY	1 cut(s)	891
BssMI	GATC	5 cut(s)	308, 327, 520, 939, 1021
Bst4CI	ACNGT	3 cut(s)	321, 352, 1045
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstBI	TTCGAA	1 cut(s)	907
BstDEI	CTNAG	5 cut(s)	110, 119, 341, 592, 695
BstF5I	GGATG	3 cut(s)	488, 562, 876
BstKTI	GATC	5 cut(s)	311, 330, 523, 942, 1024
BstMBI	GATC	5 cut(s)	308, 327, 520, 939, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 428, 453, 557
BstX2I	RGATCY	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	431, 819, 1032
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	488, 562, 876
CciI	TCATGA	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	891
Cfr13I	GGNCC	3 cut(s)	430, 485, 817
CspAI	ACCGGT	1 cut(s)	891
CspCI	CAANNNNNGTGG	1 cut(s)	1045
CviAII	CATG	3 cut(s)	416, 704, 914
DdeI	CTNAG	5 cut(s)	110, 119, 341, 592, 695
DpnI	GATC	5 cut(s)	310, 329, 522, 941, 1023
DpnII	GATC	5 cut(s)	308, 327, 520, 939, 1021
DraI	TTTAAA	2 cut(s)	375, 564
EaeI	YGGCCR	1 cut(s)	1030
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	99, 861
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	3 cut(s)	419, 707, 917
FalI	AAGNNNNNCTT	4 cut(s)	191, 223, 834, 866
FatI	CATG	3 cut(s)	415, 703, 913
FbaI	TGATCA	3 cut(s)	520, 939, 1021
FokI	GGATG	3 cut(s)	475, 569, 883
FriOI	GRGCYC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	302, 804
HaeIII	GGCC	3 cut(s)	431, 819, 1032
HapII	CCGG	1 cut(s)	892
Hin1II	CATG	3 cut(s)	419, 707, 917
HincII	GTYRAC	3 cut(s)	150, 271, 756
HindII	GTYRAC	3 cut(s)	150, 271, 756
HindIII	AAGCTT	2 cut(s)	205, 289
HinfI	GANTC	3 cut(s)	473, 604, 752
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	892
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	3 cut(s)	150, 271, 756
Hpy188I	TCNGA	7 cut(s)	79, 266, 595, 669, 841, 922, 939
Hpy188III	TCNNGA	4 cut(s)	385, 416, 529, 804
Hpy8I	GTNNAC	3 cut(s)	150, 271, 756
HpyAV	CCTTC	2 cut(s)	271, 476
HpyCH4III	ACNGT	3 cut(s)	321, 352, 1045
HpyCH4V	TGCA	5 cut(s)	28, 172, 286, 515, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 428, 453, 557
HpyF3I	CTNAG	5 cut(s)	110, 119, 341, 592, 695
Hsp92II	CATG	3 cut(s)	419, 707, 917
Ksp22I	TGATCA	3 cut(s)	520, 939, 1021
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	308, 327, 520, 939, 1021
LmnI	GCTCC	1 cut(s)	184
LweI	GCATC	3 cut(s)	502, 547, 1022
MaeI	CTAG	2 cut(s)	302, 804
MaeIII	GTNAC	2 cut(s)	297, 787
MalI	GATC	5 cut(s)	310, 329, 522, 941, 1023
MboI	GATC	5 cut(s)	308, 327, 520, 939, 1021
MboII	GAAGA	5 cut(s)	551, 731, 842, 874, 896
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	1032
MluCI	AATT	7 cut(s)	9, 358, 411, 516, 580, 768, 970
MluNI	TGGCCA	1 cut(s)	1032
MlyI	GAGTC	1 cut(s)	761
MnlI	CCTC	4 cut(s)	58, 593, 771, 830
Mox20I	TGGCCA	1 cut(s)	1032
MroXI	GAANNNNTTC	1 cut(s)	972
MscI	TGGCCA	1 cut(s)	1032
MseI	TTAA	9 cut(s)	104, 270, 278, 294, 374, 450, 563, 647, 723
Msp20I	TGGCCA	1 cut(s)	1032
MspI	CCGG	1 cut(s)	892
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	2 cut(s)	51, 114
MwoI	GCNNNNNNNGC	4 cut(s)	120, 428, 453, 557
NdeII	GATC	5 cut(s)	308, 327, 520, 939, 1021
NlaIII	CATG	3 cut(s)	419, 707, 917
NlaIV	GGNNCC	2 cut(s)	180, 329
NmuCI	GTSAC	1 cut(s)	297
NspV	TTCGAA	1 cut(s)	907
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	2 cut(s)	51, 114
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	2 cut(s)	473, 604
PinAI	ACCGGT	1 cut(s)	891
PleI	GAGTC	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	760
PsiI	TTATAA	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	180, 329
PspPI	GGNCC	3 cut(s)	430, 485, 817
PsuI	RGATCY	1 cut(s)	327
SaqAI	TTAA	9 cut(s)	104, 270, 278, 294, 374, 450, 563, 647, 723
Sau3AI	GATC	5 cut(s)	308, 327, 520, 939, 1021
Sau96I	GGNCC	3 cut(s)	430, 485, 817
SchI	GAGTC	1 cut(s)	761
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	7 cut(s)	209, 263, 293, 316, 424, 487, 738
SfaNI	GCATC	3 cut(s)	502, 547, 1022
SfuI	TTCGAA	1 cut(s)	907
SinI	GGWCC	1 cut(s)	485
Sse9I	AATT	7 cut(s)	9, 358, 411, 516, 580, 768, 970
SsiI	CCGC	2 cut(s)	123, 461
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	2 cut(s)	302, 804
TaaI	ACNGT	3 cut(s)	321, 352, 1045
TaqI	TCGA	5 cut(s)	384, 501, 708, 750, 907
TasI	AATT	7 cut(s)	9, 358, 411, 516, 580, 768, 970
TfiI	GAWTC	2 cut(s)	473, 604
Tru1I	TTAA	9 cut(s)	104, 270, 278, 294, 374, 450, 563, 647, 723
Tru9I	TTAA	9 cut(s)	104, 270, 278, 294, 374, 450, 563, 647, 723
TseFI	GTSAC	1 cut(s)	297
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	3 cut(s)	404, 432, 692
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	970
XbaI	TCTAGA	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	2 cut(s)	302, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.