Rh1DG198000

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014821
Physical Location & Seq
Reverse (-)
39010679 .. 39012273
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG198000.1

Sequence Viewer

Length: 219 bp
ATGGTTGGTGGGTTGATTGGTAGATGCGGCTCCAACATTTCAAGGATCAGAAATGAGTCTGGCGCAATGATCAAGGTTTATGGTGGGAAAGGTGAACAAAAGCATAGGCAAATTCAGTTTTGTGGTAATCCTCAGCAGGTGGCATTGGCAAAGCAGCGGGTTGATGAGTACATCTACTCCCAGTTGATACAACAAGCTGGTGCTCAACAGACAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

72

Amino Acids

7.88

Weight (kDa)

9.69

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 1 - 55 1.4e-12 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AciI CCGC 2 cut(s) 27, 157
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 1 cut(s) 42
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 1 cut(s) 205
AlwI GGATC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 111
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 166
BclI TGATCA 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 2 cut(s) 28, 155
BlsI GCNGC 2 cut(s) 29, 156
BmiI GGNNCC 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 45, 69
BspACI CCGC 2 cut(s) 27, 157
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 181
BssMI GATC 2 cut(s) 45, 69
BstDEI CTNAG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 48, 72
BstMBI GATC 2 cut(s) 45, 69
BstV1I GCAGC 1 cut(s) 166
BveI ACCTGC 1 cut(s) 127
CfoI GCGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 2 cut(s) 30, 197
CviKI_1 RGCY 2 cut(s) 30, 197
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 47, 71
DpnII GATC 2 cut(s) 45, 69
FaiI YATR 2 cut(s) 81, 105
FauI CCCGC 1 cut(s) 150
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 28, 155
Fsp4HI GCNGC 2 cut(s) 28, 155
GlaI GCGC 1 cut(s) 64
GluI GCNGC 2 cut(s) 28, 155
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 132
HspAI GCGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 45, 69
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 4 cut(s) 45, 122, 183, 194
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 14
MalI GATC 2 cut(s) 47, 71
MboI GATC 2 cut(s) 45, 69
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 111
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 157
NdeII GATC 2 cut(s) 45, 69
NlaIV GGNNCC 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 29, 156
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 2 cut(s) 28, 155
Sau3AI GATC 2 cut(s) 45, 69
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 205
SetI ASST 4 cut(s) 78, 94, 141, 199
SfaNI GCATC 1 cut(s) 14
SgeI CNNG 8 cut(s) 54, 72, 85, 149, 170, 193, 206, 210
Sse9I AATT 1 cut(s) 111
SsiI CCGC 2 cut(s) 27, 157
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 30
TseI GCWGC 1 cut(s) 154
XapI RAATTY 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.