RchiOBHm_Chr2g0139521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004880
Physical Location & Seq
Reverse (-)
57096108 .. 57100973
4866 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51006

Sequence Viewer

Length: 366 bp
ATGGATCAAACTGATCTGAACCAAAAAGTCCGTTCACTACACAGTCCAAACAGCATGAACTTACGTGATGTTTACAGATCCTGGAATGGGACAAACAGTAGTAGAAAAGGGTTGGATTTAGGATTACTGTTTTGCACTGAAACAATAAGTATATATAATTCTCAACCCCAGCATCTATCGCATTCGAGAAGTCTGCATCGGTATCTAAAGTTCCTGTTAACTGACATTAGACTTCCCAGTCAATCAAGATCAGGAAAAGGCCGCTCATCAGCAAATACGGTTTATCAGATTGCTCATCTATTCAGCTTGCTTTCAAGATCATCTGCTCCTCAGTCTTTAGTCTGCTTCATCGCATTCAGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

10.21

Isoelectric Point (pI)

62.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 237
AccBSI CCGCTC 1 cut(s) 264
AciI CCGC 1 cut(s) 262
AclWI GGATC 2 cut(s) 12, 72
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 315
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
AlwI GGATC 2 cut(s) 12, 72
AlwNI CAGNNNCTG 1 cut(s) 81
AoxI GGCC 1 cut(s) 259
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 1 cut(s) 82
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 2 cut(s) 181, 205
BmuI ACTGGG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 318
BseYI CCCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 261
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 103
BsmI GAATGC 2 cut(s) 181, 353
BsnI GGCC 1 cut(s) 261
Bsp143I GATC 5 cut(s) 4, 13, 77, 248, 317
BspACI CCGC 1 cut(s) 262
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 343
BspPI GGATC 2 cut(s) 12, 72
BsrBI CCGCTC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 237
BssMI GATC 5 cut(s) 4, 13, 77, 248, 317
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 4 cut(s) 44, 98, 129, 280
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 330
BstKTI GATC 5 cut(s) 7, 16, 80, 251, 320
BstMBI GATC 5 cut(s) 4, 13, 77, 248, 317
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 308
CaiI CAGNNNCTG 1 cut(s) 81
CviAII CATG 1 cut(s) 55
CviJI RGCY 2 cut(s) 261, 306
CviKI_1 RGCY 2 cut(s) 261, 306
DdeI CTNAG 1 cut(s) 330
DpnI GATC 5 cut(s) 6, 15, 79, 250, 319
DpnII GATC 5 cut(s) 4, 13, 77, 248, 317
DrdI GACNNNNNNGTC 1 cut(s) 237
DseDI GACNNNNNNGTC 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 80
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 56, 152, 154, 156
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 1 cut(s) 58
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HpaI GTTAAC 1 cut(s) 219
Hpy166II GTNNAC 3 cut(s) 35, 73, 219
Hpy188I TCNGA 2 cut(s) 18, 288
Hpy188III TCNNGA 4 cut(s) 186, 246, 252, 315
Hpy8I GTNNAC 3 cut(s) 35, 73, 219
HpyCH4III ACNGT 4 cut(s) 44, 98, 129, 280
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 135, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 1 cut(s) 58
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 5 cut(s) 4, 13, 77, 248, 317
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 6 cut(s) 67, 94, 182, 227, 237, 250
LweI GCATC 2 cut(s) 181, 205
MaeII ACGT 1 cut(s) 64
MalI GATC 5 cut(s) 6, 15, 79, 250, 319
MbiI CCGCTC 1 cut(s) 264
MboI GATC 5 cut(s) 4, 13, 77, 248, 317
MflI RGATCY 1 cut(s) 77
MluCI AATT 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 1 cut(s) 339
MseI TTAA 2 cut(s) 218, 364
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 2 cut(s) 181, 353
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 5 cut(s) 4, 13, 77, 248, 317
NlaIII CATG 1 cut(s) 58
PctI GAATGC 2 cut(s) 181, 353
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 80
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
PstNI CAGNNNCTG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 77
SaqAI TTAA 2 cut(s) 218, 364
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 5 cut(s) 4, 13, 77, 248, 317
ScrFI CCNGG 1 cut(s) 82
SetI ASST 2 cut(s) 67, 308
SfaNI GCATC 2 cut(s) 181, 205
Sse9I AATT 1 cut(s) 157
SsiI CCGC 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 4 cut(s) 44, 98, 129, 280
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 185
TasI AATT 1 cut(s) 157
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 218, 364
Tru9I TTAA 2 cut(s) 218, 364
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 71, 337
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.