Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004880

Physical Location & Seq

Genomic Coordinates Forward (+)

59869551 .. 59873251

Gene Structure 3701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCATTCTTTCAAACTATCCTTTGACAATAAACATCATAGAAGCTGCTTCTCTAACAGTTCAATCATACAAACAAACAAGATGCTCTATATGCAAGGATGCCACGTGCATGTCATCAAAAGAGACTTGGGTGAGCCAGGGAAAATTGTCAAAAAGCTGTTACGGCCTCAGGTCTATCTCAAATTGATCAATCTGGATGTTGAGAATTTGTCCCTTGCATCAAAAGTGGAGGAGATTAATGTCCTAATCTCCCCTGATTTACAGGTACTACTTTTGGATTTAATTCCTCTTCAACGTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0004506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0012505 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

101

Amino Acids

11.68

Weight (kDa)

9.26

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004880)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0127211 RchiOBHm_Chr2g0139521 RchiOBHm_Chr4g0426021 RchiOBHm_Chr7g0215691
rosa_laevigata	RLG00000013555 RLG00000022625 RLG00000025917 RLG00000026011 RLG00000031338 RLG00000035292
rosa_roxburghii	Rroxscaffold_1G00061270 Rroxscaffold_2G00080310 Rroxscaffold_5G00368020 Rroxscaffold_7G00185710 Rroxscaffold_7G00209630
rosa_rugosa	Rorug05G0481000 Rorug06G0001200
rosa_samantha	Rh2BG287200 Rh3CG326000 Rh4DG038400 Rh4DG214600 Rh5AG514800 Rh6BG109200 Rh6BG184600 Rh6BG190000 Rh6CG109500 Rh6CG109600 Rh6CG262000 Rh6DG099200 Rh7BG146700 Rh7CG407100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	205
AcvI	CACGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	267
AgsI	TTSAA	3 cut(s)	13, 63, 293
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	45, 157
AluI	AGCT	2 cut(s)	45, 157
Alw26I	GTCTC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	205
AseI	ATTAAT	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	138
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	72, 89, 227
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	104, 202
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	104, 202
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 163
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	104, 202
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	45, 136, 157, 166
CviKI_1	RGCY	4 cut(s)	45, 136, 157, 166
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco72I	CACGTG	1 cut(s)	106
Eco81I	CCTNAGG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	39, 68, 90, 92, 111
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	2 cut(s)	111, 209
Fsp4HI	GCNGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	105, 295
HpyCH4V	TGCA	4 cut(s)	4, 94, 109, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 163
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	105, 295
Hsp92II	CATG	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	186
LpnPI	CCDG	6 cut(s)	123, 150, 155, 179, 248, 267
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	3 cut(s)	72, 89, 227
MaeII	ACGT	2 cut(s)	105, 295
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	281
MluCI	AATT	4 cut(s)	144, 182, 205, 282
MnlI	CCTC	3 cut(s)	177, 223, 297
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	237, 281
MslI	CAYNNNNRTG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	91, 163
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	113
PctI	GAATGC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	47
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	237, 281
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	6 cut(s)	47, 108, 159, 174, 267, 298
SfaNI	GCATC	3 cut(s)	72, 89, 227
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	144, 182, 205, 282
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	2 cut(s)	108, 298
TasI	AATT	4 cut(s)	144, 182, 205, 282
Tru1I	TTAA	2 cut(s)	237, 281
Tru9I	TTAA	2 cut(s)	237, 281
TseI	GCWGC	1 cut(s)	45
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.