Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004880

Physical Location & Seq

Genomic Coordinates Forward (+)

87086564 .. 87175931

Gene Structure 89368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG514800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATTCTAGACTGCCTTCCAGTTCGACAAGCCTCCATCAAGGTCACCATCTACTTACTATTACGCAATATCAGGCTGGGGTTTCTTAAGTGTGACAATAGCCGGTATCCGATAACATCGGATTCCACTGGGTTCGGACAAGAAACAGGGAAAACCCTTAGTAAGGATCTGAGTTACAACACTCTTGAAGAGACCGGGAAAACCCTTAGTAAGGATCTGAGTTACAACACTCTTGAAGAGACCCATGCCCTGTTCTCAAAGCTCTCTATCAACAGTAGTTCCAAGGCCAGTATTGTGAGATTATTGATCTTAAAAGACCATGATGGGCAACAGATCATTGTCCCTACACTTGATCAGAATCATGCTGAAAGCTATGAACATATCCAAAAGATGATTCAAGACAAGGAATCTCCGATTACACAACCACTTCCTAAACTAGTGGGTGCATATTTCTCTGGTGACACAAAGATTTTTAGAAGTCGTCAGTCTCTGATGTCTGAAGAACTTAGATTGCTGCAATTAAATGGCTTGCTGCAGACTTGCTATAAGATTTTGGCAACTGGAAAGCCTTCCATTCTGACTTCACGGGTGCAAAGTTCATTGAACGCCAAAATGGAAGAGATGCTGAAGGAGCGAACTGAAAACATCTTCCATTGTATCCATAGCTTAGCCATATATTTTTTGACTGGCTGTCTTAATGCAATTGAGGACTTAAGGAAGAGCACATTGAAATTGCCAAAGCCAAGAACAAAATTCTCAGACCCAAATAAGGGGCTCCGAGCAGCAATCAAAATCAAGGAGACAATGAAACACCTCTTTGAGAGATTTCATCAAACATCTTGCCCCCTTCTCTTGAAGAAAAACTCGAGAAACATCATGGTTAAAGTTGCATCTTCACTGAAAAGTAATGGGATAGAAGAAAGGGTTATTGGGGGCATGCATGAGTCTTCAAATTTAATTGCTCTGAGATTCCGATCACCACAATCGGTGAGCCTCCGACCAGAAATTCTTGGAGCTTTGGATCTGGTTGGCTATAGGCAGTCCACTACCTCACAGCAGAGCGGCGACCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

358

Amino Acids

40.31

Weight (kDa)

9.46

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004880)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0127211 RchiOBHm_Chr2g0139521 RchiOBHm_Chr4g0426021 RchiOBHm_Chr7g0215691
rosa_laevigata	RLG00000013555 RLG00000022625 RLG00000025917 RLG00000026011 RLG00000031338 RLG00000035292
rosa_roxburghii	Rroxscaffold_1G00061270 Rroxscaffold_2G00080310 Rroxscaffold_5G00368020 Rroxscaffold_7G00185710 Rroxscaffold_7G00209630
rosa_rugosa	Rorug05G0481000 Rorug06G0001200
rosa_samantha	Rh2BG287200 Rh3CG326000 Rh4DG038400 Rh4DG214600 Rh5AG514800 Rh6BG109200 Rh6BG184600 Rh6BG190000 Rh6CG109500 Rh6CG109600 Rh6CG262000 Rh6DG099200 Rh7BG146700 Rh7CG407100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1062
AciI	CCGC	1 cut(s)	1062
AclWI	GGATC	3 cut(s)	174, 222, 1029
AcsI	RAATTY	3 cut(s)	752, 952, 1005
AcuI	CTGAAG	2 cut(s)	519, 647
AfiI	CCNNNNNNNGG	4 cut(s)	163, 211, 769, 770
AflII	CTTAAG	2 cut(s)	86, 712
AgsI	TTSAA	7 cut(s)	188, 236, 398, 604, 730, 856, 951
AhdI	GACNNNNNGTC	1 cut(s)	690
AhlI	ACTAGT	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	4 cut(s)	378, 410, 912, 944
AluBI	AGCT	4 cut(s)	262, 372, 666, 1016
AluI	AGCT	4 cut(s)	262, 372, 666, 1016
Alw21I	GWGCWC	1 cut(s)	725
Alw26I	GTCTC	4 cut(s)	185, 233, 492, 794
AlwI	GGATC	3 cut(s)	174, 222, 1029
AlwNI	CAGNNNCTG	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	865
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	3 cut(s)	514, 532, 782
ApoI	RAATTY	3 cut(s)	752, 952, 1005
Asp700I	GAANNNNTTC	1 cut(s)	568
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	4 cut(s)	37, 470, 969, 1000
AvaI	CYCGRG	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	777
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	725
BbvI	GCAGC	3 cut(s)	501, 519, 794
BccI	CCATC	3 cut(s)	44, 56, 317
BciVI	GTATCC	2 cut(s)	117, 668
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	4 cut(s)	185, 233, 492, 794
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	2 cut(s)	8, 437
BfmI	CTRYAG	2 cut(s)	533, 1033
BfrI	CTTAAG	2 cut(s)	86, 712
BfuI	GTATCC	2 cut(s)	117, 668
BisI	GCNGC	4 cut(s)	515, 533, 783, 1063
BlpI	GCTNAGC	1 cut(s)	667
BlsI	GCNGC	4 cut(s)	516, 534, 784, 1064
Bme1390I	CCNGG	1 cut(s)	196
BmeRI	GACNNNNNGTC	1 cut(s)	690
BmeT110I	CYCGRG	1 cut(s)	865
BmiI	GGNNCC	1 cut(s)	776
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	612, 899
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	939
Bpu1102I	GCTNAGC	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	196
BsaBI	GATNNNNATC	2 cut(s)	357, 973
BsaI	GGTCTC	2 cut(s)	185, 233
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 211, 769, 770
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	5 cut(s)	20, 133, 288, 565, 691
Bse8I	GATNNNNATC	2 cut(s)	357, 973
BseDI	CCNNGG	1 cut(s)	282
BseJI	GATNNNNATC	2 cut(s)	357, 973
BseLI	CCNNNNNNNGG	4 cut(s)	163, 211, 769, 770
BseMII	CTCAG	4 cut(s)	161, 209, 771, 956
BseNI	ACTGG	5 cut(s)	20, 133, 288, 565, 691
BseXI	GCAGC	3 cut(s)	501, 519, 794
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	725
BsiHKCI	CYCGRG	1 cut(s)	865
BsiSI	CCGG	2 cut(s)	103, 195
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	4 cut(s)	163, 211, 769, 770
BsmAI	GTCTC	4 cut(s)	185, 233, 492, 794
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	2 cut(s)	185, 233
BsoBI	CYCGRG	1 cut(s)	865
Bsp1286I	GDGCHC	2 cut(s)	725, 777
Bsp143I	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
Bsp1720I	GCTNAGC	1 cut(s)	667
BspACI	CCGC	1 cut(s)	1062
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	4 cut(s)	162, 210, 770, 957
BspLI	GGNNCC	1 cut(s)	776
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	3 cut(s)	174, 222, 1029
BspQI	GCTCTTC	1 cut(s)	713
BspTI	CTTAAG	2 cut(s)	86, 712
BspTNI	GGTCTC	2 cut(s)	185, 233
BsrBI	CCGCTC	1 cut(s)	1062
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	5 cut(s)	20, 133, 288, 565, 691
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	4 cut(s)	183, 231, 612, 713
BstAFI	CTTAAG	2 cut(s)	86, 712
BstC8I	GCNNGC	2 cut(s)	530, 938
BstDEI	CTNAG	8 cut(s)	158, 170, 206, 218, 506, 667, 757, 965
BstEII	GGTNACC	1 cut(s)	43
BstENI	CCTNNNNNAGG	2 cut(s)	161, 209
BstKTI	GATC	7 cut(s)	169, 217, 309, 336, 355, 977, 1024
BstMAI	GTCTC	4 cut(s)	185, 233, 492, 794
BstMBI	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNSI	RCATGY	1 cut(s)	940
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	533, 1033
BstV1I	GCAGC	3 cut(s)	501, 519, 794
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	3 cut(s)	166, 214, 1021
BstYI	RGATCY	3 cut(s)	166, 214, 1021
BsuI	GTATCC	2 cut(s)	117, 668
BsuRI	GGCC	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	126, 896
Cac8I	GCNNGC	2 cut(s)	530, 938
CaiI	CAGNNNCTG	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	102
CviAII	CATG	6 cut(s)	245, 320, 362, 877, 937, 941
DdeI	CTNAG	8 cut(s)	158, 170, 206, 218, 506, 667, 757, 965
DpnI	GATC	7 cut(s)	168, 216, 308, 335, 354, 976, 1023
DpnII	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
DriI	GACNNNNNGTC	1 cut(s)	690
Eam1104I	CTCTTC	4 cut(s)	183, 231, 612, 713
Eam1105I	GACNNNNNGTC	1 cut(s)	690
EarI	CTCTTC	4 cut(s)	183, 231, 612, 713
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	777
Eco31I	GGTCTC	2 cut(s)	185, 233
Eco57I	CTGAAG	2 cut(s)	519, 647
Eco88I	CYCGRG	1 cut(s)	865
Eco91I	GGTNACC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	2 cut(s)	161, 209
EcoO65I	GGTNACC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	942
EcoT38I	GRGCYC	1 cut(s)	777
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	6 cut(s)	248, 323, 365, 880, 940, 944
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	6 cut(s)	244, 319, 361, 876, 936, 940
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	4 cut(s)	515, 533, 783, 1063
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	4 cut(s)	515, 533, 783, 1063
FspBI	CTAG	2 cut(s)	8, 437
GluI	GCNGC	4 cut(s)	515, 533, 783, 1063
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	103, 195
Hin1II	CATG	6 cut(s)	248, 323, 365, 880, 940, 944
HinfI	GANTC	7 cut(s)	4, 122, 358, 394, 407, 944, 969
HpaII	CCGG	2 cut(s)	103, 195
HphI	GGTGA	4 cut(s)	37, 470, 969, 1000
Hpy166II	GTNNAC	1 cut(s)	1044
Hpy188III	TCNNGA	6 cut(s)	8, 185, 233, 398, 853, 867
Hpy8I	GTNNAC	1 cut(s)	1044
HpyAV	CCTTC	4 cut(s)	26, 579, 622, 857
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	7 cut(s)	446, 517, 535, 592, 701, 890, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	8 cut(s)	158, 170, 206, 218, 506, 667, 757, 965
Hsp92II	CATG	6 cut(s)	248, 323, 365, 880, 940, 944
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
LguI	GCTCTTC	1 cut(s)	713
LmnI	GCTCC	3 cut(s)	631, 780, 1013
Lsp1109I	GCAGC	3 cut(s)	501, 519, 794
LweI	GCATC	2 cut(s)	612, 899
MaeI	CTAG	2 cut(s)	8, 437
MaeIII	GTNAC	5 cut(s)	43, 92, 173, 221, 458
MalI	GATC	7 cut(s)	168, 216, 308, 335, 354, 976, 1023
MbiI	CCGCTC	1 cut(s)	1062
MboI	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	3 cut(s)	166, 214, 1021
MhlI	GDGCHC	2 cut(s)	725, 777
MluCI	AATT	7 cut(s)	518, 702, 731, 752, 952, 957, 1005
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	1 cut(s)	1021
MnlI	CCTC	5 cut(s)	43, 700, 824, 1004, 1060
Mph1103I	ATGCAT	1 cut(s)	942
MroXI	GAANNNNTTC	1 cut(s)	568
MseI	TTAA	7 cut(s)	87, 311, 521, 696, 713, 882, 956
MspCI	CTTAAG	2 cut(s)	86, 712
MspI	CCGG	2 cut(s)	103, 195
MspR9I	CCNGG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	702
MwoI	GCNNNNNNNGC	1 cut(s)	631
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
NlaIII	CATG	6 cut(s)	248, 323, 365, 880, 940, 944
NlaIV	GGNNCC	1 cut(s)	776
NmuCI	GTSAC	3 cut(s)	43, 92, 458
NsiI	ATGCAT	1 cut(s)	942
NspI	RCATGY	1 cut(s)	940
PaeI	GCATGC	1 cut(s)	940
PaeR7I	CTCGAG	1 cut(s)	865
PciSI	GCTCTTC	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	568
PfeI	GAWTC	6 cut(s)	4, 122, 358, 394, 407, 969
PkrI	GCNGC	4 cut(s)	516, 534, 784, 1064
PleI	GAGTC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	952
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	776
PstI	CTGCAG	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	3 cut(s)	166, 214, 1021
SapI	GCTCTTC	1 cut(s)	713
SaqAI	TTAA	7 cut(s)	87, 311, 521, 696, 713, 882, 956
SatI	GCNGC	4 cut(s)	515, 533, 783, 1063
Sau3AI	GATC	7 cut(s)	166, 214, 306, 333, 352, 974, 1021
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	725, 777
SetI	ASST	7 cut(s)	45, 264, 374, 668, 816, 1018, 1052
SfaNI	GCATC	2 cut(s)	612, 899
SfcI	CTRYAG	2 cut(s)	533, 1033
Sfr274I	CTCGAG	1 cut(s)	865
SlaI	CTCGAG	1 cut(s)	865
SmlI	CTYRAG	3 cut(s)	86, 712, 865
SmoI	CTYRAG	3 cut(s)	86, 712, 865
SpeI	ACTAGT	1 cut(s)	436
SphI	GCATGC	1 cut(s)	940
Sse9I	AATT	7 cut(s)	518, 702, 731, 752, 952, 957, 1005
SsiI	CCGC	1 cut(s)	1062
SspMI	CTAG	2 cut(s)	8, 437
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	25, 866
TasI	AATT	7 cut(s)	518, 702, 731, 752, 952, 957, 1005
TauI	GCSGC	1 cut(s)	1065
TfiI	GAWTC	6 cut(s)	4, 122, 358, 394, 407, 969
Tru1I	TTAA	7 cut(s)	87, 311, 521, 696, 713, 882, 956
Tru9I	TTAA	7 cut(s)	87, 311, 521, 696, 713, 882, 956
TscAI	CASTG	2 cut(s)	133, 903
TseFI	GTSAC	3 cut(s)	43, 92, 458
TseI	GCWGC	3 cut(s)	514, 532, 782
Tsp45I	GTSAC	3 cut(s)	43, 92, 458
TspDTI	ATGAA	4 cut(s)	390, 588, 818, 821
TspRI	CASTG	2 cut(s)	133, 903
Vha464I	CTTAAG	2 cut(s)	86, 712
XagI	CCTNNNNNAGG	2 cut(s)	161, 209
XapI	RAATTY	3 cut(s)	752, 952, 1005
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	940
XhoI	CTCGAG	1 cut(s)	865
XmnI	GAANNNNTTC	1 cut(s)	568
XspI	CTAG	2 cut(s)	8, 437
Zsp2I	ATGCAT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.