Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004880

Physical Location & Seq

Genomic Coordinates Forward (+)

83441704 .. 83446350

Gene Structure 4647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATCAAACTGATCTGAACCAAAAAGTCCATTCACTACACAGTCCAAACAGCATGAACTTACGTGATGTTTCCAGATCCTGGAATGGGACAAACAGTAGTAGAAAAGGGTTGAATTTAGGATTACTATTTTGCACTGAAACAATAAGTATATATAATTCTCAACCCCAGCATCTATCGCATTCGAGAAGTCTCCATCGGTATCTAGAGTTCCTGTTAACTGACATTAGACTTCCCAGTCAATCAAGATCAGGAAAAGGCCGCTTTGACAATAAACATCATAGAAGCTGCTTCTCTAACAGTTCAATCATACAAACAAACAAGATGCTCTATATGCAAGGATGCCACGTGCATGTCATCAAAAGAGACTTGGGTGAGCCAGGGAAAATTGTCAAAAAGCTGTTACGGCCTCAGGTCTATCTCAAATTGATCAATCTGGATGTTGAGAAGGCAGGAGAGGCAGAACTGTTGCTCAGAAGAGAATGTCGCAGTGTAAGAAGAAGACTCATGAAGAGAAGAAGTAATGAAATTAGCGAGCAACGTAATGGTGCTGGAGATGACAAGAAGAATGACACACAGATAATCCTGGCTCCAATCTTCGTCACAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0004506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0012505 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

204

Amino Acids

23.52

Weight (kDa)

10.1

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004880)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0127211 RchiOBHm_Chr2g0139521 RchiOBHm_Chr4g0426021 RchiOBHm_Chr7g0215691
rosa_laevigata	RLG00000013555 RLG00000022625 RLG00000025917 RLG00000026011 RLG00000031338 RLG00000035292
rosa_roxburghii	Rroxscaffold_1G00061270 Rroxscaffold_2G00080310 Rroxscaffold_5G00368020 Rroxscaffold_7G00185710 Rroxscaffold_7G00209630
rosa_rugosa	Rorug05G0481000 Rorug06G0001200
rosa_samantha	Rh2BG287200 Rh3CG326000 Rh4DG038400 Rh4DG214600 Rh5AG514800 Rh6BG109200 Rh6BG184600 Rh6BG190000 Rh6CG109500 Rh6CG109600 Rh6CG262000 Rh6DG099200 Rh7BG146700 Rh7CG407100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	237
AccB7I	CCANNNNNTGG	1 cut(s)	81
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	12, 72
AcsI	RAATTY	1 cut(s)	115
AcvI	CACGTG	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	81, 87
AgsI	TTSAA	2 cut(s)	115, 306
AjnI	CCWGG	3 cut(s)	80, 379, 585
AluBI	AGCT	2 cut(s)	288, 400
AluI	AGCT	2 cut(s)	288, 400
Alw26I	GTCTC	2 cut(s)	197, 360
AlwI	GGATC	2 cut(s)	12, 72
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	259, 407
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	411
BbrPI	CACGTG	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	3 cut(s)	82, 381, 587
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	197, 360
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	262, 289
BlsI	GCNGC	2 cut(s)	263, 290
Bme1390I	CCNGG	3 cut(s)	82, 381, 587
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	3 cut(s)	82, 381, 587
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	181, 315, 332
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	573
BsaAI	YACGTR	2 cut(s)	65, 349
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 87
Bse1I	ACTGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	3 cut(s)	82, 381, 587
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	347, 445
BseLI	CCNNNNNNNGG	2 cut(s)	81, 87
BseMII	CTCAG	2 cut(s)	425, 487
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	2 cut(s)	261, 409
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	81, 87
BsmAI	GTCTC	2 cut(s)	197, 360
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	261, 409
Bsp143I	GATC	5 cut(s)	4, 13, 77, 248, 429
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	2 cut(s)	261, 409
BspCNI	CTCAG	2 cut(s)	424, 486
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	591
BspPI	GGATC	2 cut(s)	12, 72
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	5 cut(s)	4, 13, 77, 248, 429
Bst2UI	CCWGG	3 cut(s)	82, 381, 587
Bst4CI	ACNGT	4 cut(s)	44, 98, 302, 468
Bst6I	CTCTTC	2 cut(s)	472, 506
BstBAI	YACGTR	2 cut(s)	65, 349
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	411, 473
BstF5I	GGATG	2 cut(s)	347, 445
BstKTI	GATC	5 cut(s)	7, 16, 80, 251, 432
BstMAI	GTCTC	2 cut(s)	197, 360
BstMBI	GATC	5 cut(s)	4, 13, 77, 248, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 334, 406, 458
BstNI	CCWGG	3 cut(s)	82, 381, 587
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	3 cut(s)	80, 379, 585
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	261, 409
BtsCI	GGATG	2 cut(s)	347, 445
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	2 cut(s)	135, 496
Cac8I	GCNNGC	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	81
CciI	TCATGA	1 cut(s)	507
CviAII	CATG	3 cut(s)	55, 353, 508
CviJI	RGCY	6 cut(s)	261, 288, 379, 400, 409, 590
CviKI_1	RGCY	6 cut(s)	261, 288, 379, 400, 409, 590
DdeI	CTNAG	2 cut(s)	411, 473
DpnI	GATC	5 cut(s)	6, 15, 79, 250, 431
DpnII	GATC	5 cut(s)	4, 13, 77, 248, 429
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	472, 506
EarI	CTCTTC	2 cut(s)	472, 506
Eco72I	CACGTG	1 cut(s)	349
Eco81I	CCTNAGG	1 cut(s)	411
EcoRII	CCWGG	3 cut(s)	80, 379, 585
FaeI	CATG	3 cut(s)	58, 356, 511
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	3 cut(s)	54, 352, 507
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	262, 289
FokI	GGATG	2 cut(s)	354, 452
Fsp4HI	GCNGC	2 cut(s)	262, 289
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	2 cut(s)	262, 289
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	261, 409
Hin1II	CATG	3 cut(s)	58, 356, 511
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	504
HpaI	GTTAAC	1 cut(s)	219
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	18, 476
Hpy188III	TCNNGA	7 cut(s)	75, 186, 206, 246, 252, 437, 508
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	4 cut(s)	44, 98, 302, 468
HpyCH4IV	ACGT	3 cut(s)	64, 348, 541
HpyCH4V	TGCA	3 cut(s)	135, 337, 352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 334, 406, 458
HpyF3I	CTNAG	2 cut(s)	411, 473
HpySE526I	ACGT	3 cut(s)	64, 348, 541
Hsp92II	CATG	3 cut(s)	58, 356, 511
Ksp22I	TGATCA	1 cut(s)	429
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	4, 13, 77, 248, 429
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	3 cut(s)	181, 315, 332
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	3 cut(s)	64, 348, 541
MaeIII	GTNAC	2 cut(s)	402, 601
MalI	GATC	5 cut(s)	6, 15, 79, 250, 431
MboI	GATC	5 cut(s)	4, 13, 77, 248, 429
MboII	GAAGA	7 cut(s)	489, 510, 513, 523, 528, 577, 589
MfeI	CAATTG	1 cut(s)	610
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	6 cut(s)	115, 157, 387, 425, 528, 610
MlyI	GAGTC	1 cut(s)	498
MnlI	CCTC	2 cut(s)	420, 451
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	351
MspR9I	CCNGG	3 cut(s)	82, 381, 587
MunI	CAATTG	1 cut(s)	610
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	3 cut(s)	82, 381, 587
MwoI	GCNNNNNNNGC	4 cut(s)	178, 334, 406, 458
NdeII	GATC	5 cut(s)	4, 13, 77, 248, 429
NlaIII	CATG	3 cut(s)	58, 356, 511
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	1 cut(s)	601
NspI	RCATGY	1 cut(s)	356
PagI	TCATGA	1 cut(s)	507
PctI	GAATGC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	81
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	263, 290
PleI	GAGTC	1 cut(s)	498
PmaCI	CACGTG	1 cut(s)	349
PmlI	CACGTG	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	498
Ppu21I	YACGTR	2 cut(s)	65, 349
Psp6I	CCWGG	3 cut(s)	80, 379, 585
PspCI	CACGTG	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	3 cut(s)	80, 379, 585
PspN4I	GGNNCC	1 cut(s)	591
PsrI	GAACNNNNNNTAC	2 cut(s)	194, 226
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	2 cut(s)	262, 289
Sau3AI	GATC	5 cut(s)	4, 13, 77, 248, 429
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	3 cut(s)	82, 381, 587
SetI	ASST	6 cut(s)	67, 290, 351, 402, 417, 544
SfaNI	GCATC	3 cut(s)	181, 315, 332
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	6 cut(s)	115, 157, 387, 425, 528, 610
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	3 cut(s)	80, 379, 585
TaaI	ACNGT	4 cut(s)	44, 98, 302, 468
TaiI	ACGT	3 cut(s)	67, 351, 544
TaqI	TCGA	1 cut(s)	185
TasI	AATT	6 cut(s)	115, 157, 387, 425, 528, 610
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	2 cut(s)	142, 496
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	1 cut(s)	288
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	71, 524, 540
TspRI	CASTG	2 cut(s)	142, 496
Van91I	CCANNNNNTGG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.