Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004880

Physical Location & Seq

Genomic Coordinates Forward (+)

31732993 .. 31746285

Gene Structure 13293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG287200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCAGGTAAAACTCATCTACACAAATCTTATCCTTCTCTATCAACTGTATTGTGGATCCAAAAGTGCAACTGGAACTCTTCACGATGTACAGGAGTGGCAGGAGGAGAATGTCAAAAGGCTGAGCCAAAAACAGGAACCAATCAACTTAGTGGTTGAAAATGAAATCCATCGTGCAGTTCGTGGTGCAGCTGGAAGTGTTAGTGCCATAGGAAATTATGCTCCGGAGCTCAACAAAACAACGATTCAGGGCACATACGCCTGGGATCTCCACTCTTTCCAGAAACTCACCCCAGCTCATGGCATTCTGCCTCTGGCCTGTTTGAATTCGGCTTTTATCAGCAAGGAAATGGTTTTGCTGTTGGAATTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

124

Amino Acids

13.83

Weight (kDa)

6.4

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004880)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0127211 RchiOBHm_Chr2g0139521 RchiOBHm_Chr4g0426021 RchiOBHm_Chr7g0215691
rosa_laevigata	RLG00000013555 RLG00000022625 RLG00000025917 RLG00000026011 RLG00000031338 RLG00000035292
rosa_roxburghii	Rroxscaffold_1G00061270 Rroxscaffold_2G00080310 Rroxscaffold_5G00368020 Rroxscaffold_7G00185710 Rroxscaffold_7G00209630
rosa_rugosa	Rorug05G0481000 Rorug06G0001200
rosa_samantha	Rh2BG287200 Rh3CG326000 Rh4DG038400 Rh4DG214600 Rh5AG514800 Rh6BG109200 Rh6BG184600 Rh6BG190000 Rh6CG109500 Rh6CG109600 Rh6CG262000 Rh6DG099200 Rh7BG146700 Rh7CG407100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	223
AclWI	GGATC	3 cut(s)	51, 64, 273
AcsI	RAATTY	2 cut(s)	325, 365
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	133, 299
AgsI	TTSAA	2 cut(s)	158, 325
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	191, 229, 296
AluI	AGCT	3 cut(s)	191, 229, 296
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	51, 64, 273
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	325, 365
AsuHPI	GGTGA	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	189
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	58, 138
BmrFI	CCNGG	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 299
Bse1I	ACTGG	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	133, 299
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	2 cut(s)	195, 207
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	133, 299
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	231, 254
Bsp13I	TCCGGA	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	56, 265
Bsp1720I	GCTNAGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	114
BspEI	TCCGGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	58, 138
BspPI	GGATC	3 cut(s)	51, 64, 273
BsrGI	TGTACA	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	56, 265
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	122, 148
BstKTI	GATC	2 cut(s)	59, 268
BstMBI	GATC	2 cut(s)	56, 265
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	56, 265
BstYI	RGATCY	2 cut(s)	56, 265
BsuRI	GGCC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	7 cut(s)	121, 126, 191, 229, 296, 317, 332
CviKI_1	RGCY	7 cut(s)	121, 126, 191, 229, 296, 317, 332
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	122, 148
DpnI	GATC	2 cut(s)	58, 267
DpnII	GATC	2 cut(s)	56, 265
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	302
FaiI	YATR	4 cut(s)	209, 219, 256, 300
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	83, 224, 280
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	4, 68, 176, 188
HpyF3I	CTNAG	2 cut(s)	122, 148
Hsp92II	CATG	1 cut(s)	302
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	56, 265
LmnI	GCTCC	2 cut(s)	226, 226
Lsp1109I	GCAGC	1 cut(s)	200
MalI	GATC	2 cut(s)	58, 267
MboI	GATC	2 cut(s)	56, 265
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	2 cut(s)	56, 265
MhlI	GDGCHC	2 cut(s)	231, 254
MluCI	AATT	3 cut(s)	214, 325, 365
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	2 cut(s)	97, 321
MroI	TCCGGA	1 cut(s)	223
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	262
NdeII	GATC	2 cut(s)	56, 265
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	58, 138
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	58, 138
PsuI	RGATCY	2 cut(s)	56, 265
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	56, 265
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	231, 254
SetI	ASST	4 cut(s)	9, 193, 231, 298
Sse9I	AATT	3 cut(s)	214, 325, 365
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	3 cut(s)	214, 325, 365
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	299
XapI	RAATTY	2 cut(s)	325, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.