RchiOBHm_Chr4g0426021

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004880
Physical Location & Seq
Forward (+)
51544943 .. 51545374
432 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39510

Sequence Viewer

Length: 432 bp
ATGGCGGGTAAGGGAATAGACCCTAATGTCATTACATACTCGACGATTATTAGTTCTTTTTCTAATATGAGGAATGTTGAGTCTGCTCTTGCAGTTTTGGCGAAAACGTTTGTGAGGGGATGTAGGCCTAACATTCACACCTTTACTTCCTTGATGAAGGGTTATTTTACGGAAGGCAGAGTTAGTGAAGCTCTGGACTTGTGGAACCGCATGGTTCGTGAGGGATTTGGGCCCAATGTTGTTACATATACAACTATTATACATGGTCTCTGCTCTGTTAGGAATATGCACGAAGCTGCAGTATCTGTTTTACATGAGATGGAGAGAAAAGGTTGCTCTCCAAATGTGAGCACATATAGCACGTCACTCTTATTGATGGGTTTGCAAAAGCTGGCAACCTTGTTGGTCCATCTGAGACTTGGAACAATATGA

Protein Analysis

143

Amino Acids

15.76

Weight (kDa)

9.41

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 1 - 55 1.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 4 - 33 2.1e-06 PPR repeat
PPR_2 PF13041 8 - 55 5.7e-11 PPR repeat family
PPR_1 PF12854 39 - 72 6.2e-09 PPR repeat
PPR_2 PF13041 43 - 91 3.2e-18 PPR repeat family
PPR PF01535 47 - 76 1.5e-07 PPR repeat
PPR_3 PF13812 69 - 121 3.5e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 75 - 108 4.1e-09 PPR repeat
PPR_2 PF13041 94 - 121 4e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
AciI CCGC 2 cut(s) 5, 208
AclI AACGTT 1 cut(s) 107
AjiI CACGTC 1 cut(s) 363
AluBI AGCT 3 cut(s) 191, 296, 391
AluI AGCT 3 cut(s) 191, 296, 391
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 2 cut(s) 272, 409
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 2 cut(s) 125, 230
ApaI GGGCCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 296
AspS9I GGNCC 3 cut(s) 230, 231, 406
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 283
BccI CCATC 3 cut(s) 313, 370, 417
BcoDI GTCTC 2 cut(s) 272, 409
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 406
BmgBI CACGTC 1 cut(s) 363
BmgT120I GGNCC 3 cut(s) 230, 231, 406
BmiI GGNNCC 2 cut(s) 206, 232
BsaI GGTCTC 1 cut(s) 272
BseGI GGATG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 2 cut(s) 127, 232
BsiHKAI GWGCWC 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 272, 409
BsnI GGCC 2 cut(s) 127, 232
Bso31I GGTCTC 1 cut(s) 272
Bsp120I GGGCCC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 234, 353
BspACI CCGC 2 cut(s) 5, 208
BspANI GGCC 2 cut(s) 127, 232
BspCNI CTCAG 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 206, 232
BspMAI CTGCAG 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 1 cut(s) 413
BstF5I GGATG 1 cut(s) 125
BstMAI GTCTC 2 cut(s) 272, 409
BstMWI GCNNNNNNNGC 2 cut(s) 98, 357
BstSFI CTRYAG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 283
BsuRI GGCC 2 cut(s) 127, 232
BtrI CACGTC 1 cut(s) 363
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 393
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 3 cut(s) 230, 231, 406
CviAII CATG 3 cut(s) 211, 263, 314
CviJI RGCY 5 cut(s) 127, 191, 232, 296, 391
CviKI_1 RGCY 5 cut(s) 127, 191, 232, 296, 391
DdeI CTNAG 1 cut(s) 413
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 3 cut(s) 214, 266, 317
FatI CATG 3 cut(s) 210, 262, 313
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 2 cut(s) 127, 232
Hin1II CATG 3 cut(s) 214, 266, 317
HinfI GANTC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 2 cut(s) 194, 218
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 151, 167
HpyCH4IV ACGT 2 cut(s) 107, 362
HpyCH4V TGCA 4 cut(s) 92, 289, 299, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 357
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 2 cut(s) 107, 362
Hsp92II CATG 3 cut(s) 214, 266, 317
LpnPI CCDG 2 cut(s) 179, 377
Lsp1109I GCAGC 1 cut(s) 283
MaeII ACGT 2 cut(s) 107, 362
MaeIII GTNAC 2 cut(s) 241, 363
MhlI GDGCHC 2 cut(s) 234, 353
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 3 cut(s) 63, 108, 214
MwoI GCNNNNNNNGC 2 cut(s) 98, 357
NlaIII CATG 3 cut(s) 214, 266, 317
NlaIV GGNNCC 2 cut(s) 206, 232
NmuCI GTSAC 1 cut(s) 363
PceI AGGCCT 1 cut(s) 127
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp1406I AACGTT 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 206, 232
PspOMI GGGCCC 1 cut(s) 230
PspPI GGNCC 3 cut(s) 230, 231, 406
PstI CTGCAG 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 305
SatI GCNGC 1 cut(s) 297
Sau96I GGNCC 3 cut(s) 230, 231, 406
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 2 cut(s) 234, 353
SetI ASST 8 cut(s) 110, 143, 193, 298, 334, 365, 393, 401
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 406
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 2 cut(s) 5, 208
StuI AGGCCT 1 cut(s) 127
TaiI ACGT 2 cut(s) 110, 365
TaqI TCGA 1 cut(s) 41
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.