RLG00000026011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004880
Physical Location & Seq
Reverse (-)
49886558 .. 49889673
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026011

Sequence Viewer

Length: 462 bp
ATGATGCAAGCTGTGTTTCACGACGTTAACTATAACCAAACTGATCAGCAGATACCGTTTATCAGTAGCAAGGTCAATTGTATTGCTCATCTATTCAGCCTGCTTTCAAGTATGAAACAAACTATTGCAAGATACAACAAGTGTGACGAGTCTTCAGAGACCGCTTTGAAGAAAAGCTTGCCCTATGTGCAGAAAAATTGCAAGAGATTTGATAGAAGCATCATTATCAGGTGCAGGATTGTGTACAGTAGCAGCTCTTGCCATGATGTTTTTAACTTGGAATATAGGGAAAGCTTTTTTGAAGCGGCTGAAAGTGTTCCTGGGACATCATTCGCCATATGTATCAGTTCAAAATCCCTCTGTGAATTTCAGTATTGGTGGATAACATACAGTCACATCATGAAAAGGTCGCTTGAACATATGACGATACTTGGAGCTTCTGTCAAGGATCTGAACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.7

Weight (kDa)

8.46

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 162, 305
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 5 cut(s) 108, 169, 302, 351, 416
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 5 cut(s) 11, 177, 255, 294, 437
AluI AGCT 5 cut(s) 11, 177, 255, 294, 437
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 456
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 2 cut(s) 253, 306
BlsI GCNGC 2 cut(s) 254, 307
Bme1390I CCNGG 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 264
BsgI GTGCAG 2 cut(s) 209, 253
BslFI GGGAC 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 2 cut(s) 43, 448
BspACI CCGC 2 cut(s) 162, 305
BspHI TCATGA 1 cut(s) 399
BspPI GGATC 1 cut(s) 456
BspTNI GGTCTC 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 43, 448
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 57, 248, 392
BstAPI GCANNNNNTGC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 3 cut(s) 9, 101, 179
BstKTI GATC 2 cut(s) 46, 451
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 43, 448
BstMWI GCNNNNNNNGC 2 cut(s) 187, 258
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 9, 101, 179
CciI TCATGA 1 cut(s) 399
Csp6I GTAC 1 cut(s) 244
CviAII CATG 3 cut(s) 263, 400, 459
CviJI RGCY 7 cut(s) 11, 99, 177, 255, 294, 308, 437
CviKI_1 RGCY 7 cut(s) 11, 99, 177, 255, 294, 308, 437
CviQI GTAC 1 cut(s) 244
DpnI GATC 2 cut(s) 45, 450
DpnII GATC 2 cut(s) 43, 448
Eco31I GGTCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 3 cut(s) 266, 403, 462
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 337
FatI CATG 3 cut(s) 262, 399, 458
FauNDI CATATG 2 cut(s) 338, 420
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 253, 306
Fsp4HI GCNGC 2 cut(s) 253, 306
GluI GCNGC 2 cut(s) 253, 306
Hin1II CATG 3 cut(s) 266, 403, 462
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 2 cut(s) 175, 292
HinfI GANTC 1 cut(s) 149
HpaI GTTAAC 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 28, 244
Hpy188I TCNGA 2 cut(s) 157, 453
Hpy188III TCNNGA 2 cut(s) 20, 400
Hpy8I GTNNAC 2 cut(s) 28, 244
Hpy99I CGWCG 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 57, 248, 392
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 7, 128, 190, 201, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 258
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 266, 403, 462
Ksp22I TGATCA 1 cut(s) 43
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 43, 448
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 5 cut(s) 113, 214, 220, 306, 333
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 143, 392
MalI GATC 2 cut(s) 45, 450
MboI GATC 2 cut(s) 43, 448
MboII GAAGA 2 cut(s) 144, 181
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 1 cut(s) 448
MluCI AATT 3 cut(s) 76, 196, 365
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 2 cut(s) 27, 273
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 187, 258
NdeI CATATG 2 cut(s) 338, 420
NdeII GATC 2 cut(s) 43, 448
NlaIII CATG 3 cut(s) 266, 403, 462
NmuCI GTSAC 2 cut(s) 143, 392
PagI TCATGA 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 315
PkrI GCNGC 2 cut(s) 254, 307
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 27, 273
SatI GCNGC 2 cut(s) 253, 306
Sau3AI GATC 2 cut(s) 43, 448
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 321
SetI ASST 9 cut(s) 13, 27, 75, 179, 233, 257, 296, 410, 439
SfaNI GCATC 1 cut(s) 228
Sse9I AATT 3 cut(s) 76, 196, 365
SsiI CCGC 2 cut(s) 162, 305
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 3 cut(s) 57, 248, 392
TaiI ACGT 1 cut(s) 27
TasI AATT 3 cut(s) 76, 196, 365
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 27, 273
Tru9I TTAA 2 cut(s) 27, 273
TseFI GTSAC 2 cut(s) 143, 392
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 2 cut(s) 143, 392
TspDTI ATGAA 2 cut(s) 128, 416
XapI RAATTY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.