Rh7BG146700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004880
Physical Location & Seq
Reverse (-)
10892928 .. 10895098
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG146700.1

Sequence Viewer

Length: 399 bp
ATGATAGAAAAATGGTCATGTTCAATTTATGGTGTACTCATGAAATTCCTTCATTGTTTGGTCACAGACAAGGAATCTCTGATTACACAACCACTTCCTAAACTAGTGAGTGCATATTTCTCTGGTGACACAAAGATTTTTAGATTGCTGCAATTAAATGGCTTGCTGCAGACTTGCTATAAGATTTTGGCAACTGGAAAGCCTTCCATTCTGACTTCACAGGCGCAAAGACTTAAGAAAGAGCACATTGAAATTGCCAAAGCCAAGAACAAAGTACGAGAGATAGAGTTGCCCTTATTTGAGGAAGAGCTTCATACTCAGATCAAAGACTTGGAGTATGTTATACTGCATAAGAGCATTCTGTTTATAAAATCCTTAAACAGATCAAACAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.24

Weight (kDa)

9.28

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 368, 397
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 2 cut(s) 36, 276
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 24, 251
AhlI ACTAGT 1 cut(s) 103
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw21I GWGCWC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 148, 166
ApoI RAATTY 1 cut(s) 44
Asp700I GAANNNNTTC 2 cut(s) 202, 309
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 135, 153
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 167
BfrI CTTAAG 1 cut(s) 233
BisI GCNGC 2 cut(s) 149, 167
BlsI GCNGC 2 cut(s) 150, 168
Bse1I ACTGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 135, 153
BsiHKAI GWGCWC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 321, 383
BspCNI CTCAG 1 cut(s) 331
BspHI TCATGA 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 300
BspTI CTTAAG 1 cut(s) 233
BsrI ACTGG 1 cut(s) 199
BssMI GATC 2 cut(s) 321, 383
Bst6I CTCTTC 1 cut(s) 300
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 318
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 324, 386
BstMBI GATC 2 cut(s) 321, 383
BstSFI CTRYAG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 135, 153
Cac8I GCNNGC 1 cut(s) 164
CciI TCATGA 1 cut(s) 39
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 35, 275
CviAII CATG 2 cut(s) 18, 40
CviJI RGCY 4 cut(s) 162, 202, 263, 310
CviKI_1 RGCY 4 cut(s) 162, 202, 263, 310
CviQI GTAC 2 cut(s) 35, 275
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 323, 385
DpnII GATC 2 cut(s) 321, 383
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
FaeI CATG 2 cut(s) 21, 43
FatI CATG 2 cut(s) 17, 39
Fnu4HI GCNGC 2 cut(s) 149, 167
Fsp4HI GCNGC 2 cut(s) 149, 167
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 225
GluI GCNGC 2 cut(s) 149, 167
HhaI GCGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 21, 43
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 3 cut(s) 81, 213, 321
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 59, 213
HpyCH4V TGCA 4 cut(s) 113, 151, 169, 349
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 2 cut(s) 21, 43
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 321, 383
LguI GCTCTTC 1 cut(s) 300
LpnPI CCDG 3 cut(s) 108, 180, 206
Lsp1109I GCAGC 2 cut(s) 135, 153
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 61, 125
MalI GATC 2 cut(s) 323, 385
MboI GATC 2 cut(s) 321, 383
MboII GAAGA 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 4 cut(s) 24, 44, 152, 252
MnlI CCTC 1 cut(s) 295
MroXI GAANNNNTTC 2 cut(s) 202, 309
MseI TTAA 3 cut(s) 155, 234, 377
MspCI CTTAAG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 357
NdeII GATC 2 cut(s) 321, 383
NlaIII CATG 2 cut(s) 21, 43
NmuCI GTSAC 2 cut(s) 61, 125
PagI TCATGA 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 300
PctI GAATGC 1 cut(s) 357
PdmI GAANNNNTTC 2 cut(s) 202, 309
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 150, 168
PsiI TTATAA 2 cut(s) 368, 397
PstI CTGCAG 1 cut(s) 171
RsaI GTAC 2 cut(s) 36, 276
RsaNI GTAC 2 cut(s) 35, 275
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 155, 234, 377
SatI GCNGC 2 cut(s) 149, 167
Sau3AI GATC 2 cut(s) 321, 383
SduI GDGCHC 1 cut(s) 246
SetI ASST 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SpeI ACTAGT 1 cut(s) 103
Sse9I AATT 4 cut(s) 24, 44, 152, 252
SspMI CTAG 1 cut(s) 104
TasI AATT 4 cut(s) 24, 44, 152, 252
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 155, 234, 377
Tru9I TTAA 3 cut(s) 155, 234, 377
TseFI GTSAC 2 cut(s) 61, 125
TseI GCWGC 2 cut(s) 148, 166
Tsp45I GTSAC 2 cut(s) 61, 125
TspDTI ATGAA 3 cut(s) 41, 56, 302
Vha464I CTTAAG 1 cut(s) 233
XapI RAATTY 1 cut(s) 44
XmnI GAANNNNTTC 2 cut(s) 202, 309
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.