Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004880

Physical Location & Seq

Genomic Coordinates Reverse (-)

35512665 .. 35517357

Gene Structure 4693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG326000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGACAAATAGTGATGGAAAGGAATTCAATTGAAGATTACCCTTTTGCCCTAAAGTCTGAAACTTCCCAGTCAATCAAGATCAGGAAAAGGCCGCTCATCAGCAAATACGGTTTATCAGATTGCTCATCTATTCAGCTTGCTTTCAAGATCATCTACTCCTCAGTCTTTAGTCTGCTTCATCGCATTCAGCAGTTAAGAGAGAATCATAGACAAATACCTCACTTGACATCTTGCTTTGACAATAAACATCATAGAAGCTGCTTCTCTAACAGTTCAATTATACAAACAAACAAGATGCTTTATATGCAAGGATGCCACGTGCATGTCATCAAAAGAGACTTGGGTGAGCCAGGGAAAATTGTCAAAAAGCTATTACAGCCTCAGGTCTATCTCAAATTGATCAATCTGGCTGTTGAGAATTTGTCCCTTGCATCCAAAGTGGAGGAGATTAATGTCCTAATCTCCCCTGATTTACAGGTCAGGAAAATTGGGTACTATGGTTGTGCTCAAACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0004506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0012505 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

173

Amino Acids

19.84

Weight (kDa)

9.42

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004880)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0127211 RchiOBHm_Chr2g0139521 RchiOBHm_Chr4g0426021 RchiOBHm_Chr7g0215691
rosa_laevigata	RLG00000013555 RLG00000022625 RLG00000025917 RLG00000026011 RLG00000031338 RLG00000035292
rosa_roxburghii	Rroxscaffold_1G00061270 Rroxscaffold_2G00080310 Rroxscaffold_5G00368020 Rroxscaffold_7G00185710 Rroxscaffold_7G00209630
rosa_rugosa	Rorug05G0481000 Rorug06G0001200
rosa_samantha	Rh2BG287200 Rh3CG326000 Rh4DG038400 Rh4DG214600 Rh5AG514800 Rh6BG109200 Rh6BG184600 Rh6BG190000 Rh6CG109500 Rh6CG109600 Rh6CG262000 Rh6DG099200 Rh7BG146700 Rh7CG407100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	25, 421
AcvI	CACGTG	1 cut(s)	322
AfaI	GTAC	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	30, 35, 148, 279
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	139, 261, 373
AluI	AGCT	3 cut(s)	139, 261, 373
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	333
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	25, 421
AseI	ATTAAT	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	384
BaeI	ACNNNNGTAYC	2 cut(s)	487, 520
BbrPI	CACGTG	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	354
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	333
BisI	GCNGC	2 cut(s)	95, 262
BlsI	GCNGC	2 cut(s)	96, 263
Bme1390I	CCNGG	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	288, 305, 443
BmuI	ACTGGG	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	70
Bse21I	CCTNAGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	320, 434
BseMII	CTCAG	2 cut(s)	177, 398
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	2 cut(s)	151, 461
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	18, 412
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	2 cut(s)	18, 412
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	81, 150, 402
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	176, 397
BsrBI	CCGCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	3 cut(s)	81, 150, 402
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	113, 275
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	163, 384
BstF5I	GGATG	2 cut(s)	320, 434
BstKTI	GATC	3 cut(s)	84, 153, 405
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	3 cut(s)	81, 150, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 379
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	320, 434
Cac8I	GCNNGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	7 cut(s)	94, 139, 261, 352, 373, 382, 413
CviKI_1	RGCY	7 cut(s)	94, 139, 261, 352, 373, 382, 413
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	2 cut(s)	163, 384
DpnI	GATC	3 cut(s)	83, 152, 404
DpnII	GATC	3 cut(s)	81, 150, 402
Eco72I	CACGTG	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	329
FaiI	YATR	7 cut(s)	210, 255, 284, 306, 308, 327, 501
FaqI	GGGAC	2 cut(s)	18, 412
FatI	CATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	95, 262
FokI	GGATG	2 cut(s)	327, 421
Fsp4HI	GCNGC	2 cut(s)	95, 262
GluI	GCNGC	2 cut(s)	95, 262
HaeIII	GGCC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	61, 121
Hpy188III	TCNNGA	4 cut(s)	79, 85, 148, 484
HpyCH4III	ACNGT	2 cut(s)	113, 275
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	310, 325, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 379
HpyF3I	CTNAG	2 cut(s)	163, 384
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	81, 150, 402
LpnPI	CCDG	9 cut(s)	70, 83, 339, 366, 371, 395, 464, 469, 483
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	3 cut(s)	288, 305, 443
MaeII	ACGT	1 cut(s)	321
MalI	GATC	3 cut(s)	83, 152, 404
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	3 cut(s)	81, 150, 402
MboII	GAAGA	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	7 cut(s)	25, 30, 279, 360, 398, 421, 489
MnlI	CCTC	4 cut(s)	172, 231, 393, 439
MseI	TTAA	3 cut(s)	197, 453, 520
MslI	CAYNNNNRTG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	354
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	307, 379
NdeII	GATC	3 cut(s)	81, 150, 402
NlaIII	CATG	1 cut(s)	329
NspI	RCATGY	1 cut(s)	329
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	96, 263
PmaCI	CACGTG	1 cut(s)	322
PmlI	CACGTG	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	352
PspCI	CACGTG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	197, 453, 520
SatI	GCNGC	2 cut(s)	95, 262
Sau3AI	GATC	3 cut(s)	81, 150, 402
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	7 cut(s)	141, 223, 263, 324, 375, 390, 483
SfaNI	GCATC	3 cut(s)	288, 305, 443
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	7 cut(s)	25, 30, 279, 360, 398, 421, 489
SsiI	CCGC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	113, 275
TaiI	ACGT	1 cut(s)	324
TasI	AATT	7 cut(s)	25, 30, 279, 360, 398, 421, 489
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	3 cut(s)	197, 453, 520
Tru9I	TTAA	3 cut(s)	197, 453, 520
TseI	GCWGC	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	170
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	2 cut(s)	25, 421
XceI	RCATGY	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.