RLG00000025917

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004880
Physical Location & Seq
Forward (+)
49164148 .. 49166831
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025917

Sequence Viewer

Length: 516 bp
ATGGTTCGGAAAAGTCCATTTTGCCCTTCTTCTTCTCCTGAAAAGAAAAATGAAACTGATATCAACCGGAAGCTGAATTCGAGAAGCCTTAACCCAGCATCTATCGCATTCGAGAAGCCTCCATCGCTATCTAGAGTTCCTGTTAACGGACAACAGGCTTCCAGTCAAAATCAAGATCAGGAAAATCTCGCTGATCAGCAGATACCGTTTATCAGTAGCAAGGTCAATTGTATTGCTCATCTATTCAGTCTGCTTTCAAGTATGAAACAAACTATTGCAAGATACAACAAGTGTGACGAGTCTTCAGAGACCGCTTTGAAGAAAAGCTTGCCCTATGTGCAGAAAAATTGCAAGAGATTTGATAGAAGCATCATTATCAGGTGCAGGATTGTGTACAGTAGCAGCTCTTGCCATGATGTTTTTAACTTGGAATATAGGGAAAGCTTTTTTGAAGCGGCTGAAAGTGTTCCTGGGGTTTTGGATGAAAGAAAGCAGGGAAGTTTTGATTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.32

Weight (kDa)

8.92

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 312, 455
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 3 cut(s) 258, 319, 452
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 4 cut(s) 73, 327, 405, 444
AluI AGCT 4 cut(s) 73, 327, 405, 444
Alw26I GTCTC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 414
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 403, 456
BlsI GCNGC 2 cut(s) 404, 457
Bme1390I CCNGG 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 2 cut(s) 107, 378
BpiI GAAGAC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 470
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 414
BseYI CCCAGC 1 cut(s) 94
BsgI GTGCAG 2 cut(s) 359, 403
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 302
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 2 cut(s) 175, 193
BspACI CCGC 2 cut(s) 312, 455
BspTNI GGTCTC 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 2 cut(s) 175, 193
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 207, 398
BstAPI GCANNNNNTGC 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 329
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 2 cut(s) 178, 196
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 175, 193
BstMWI GCNNNNNNNGC 4 cut(s) 104, 124, 337, 408
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 294
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 394
CviAII CATG 1 cut(s) 413
CviJI RGCY 8 cut(s) 73, 87, 118, 158, 327, 405, 444, 458
CviKI_1 RGCY 8 cut(s) 73, 87, 118, 158, 327, 405, 444, 458
CviQI GTAC 1 cut(s) 394
DpnI GATC 2 cut(s) 177, 195
DpnII GATC 2 cut(s) 175, 193
Eco31I GGTCTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 1 cut(s) 61
FaeI CATG 1 cut(s) 416
FaiI YATR 4 cut(s) 263, 336, 414, 435
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 1 cut(s) 412
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 403, 456
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 2 cut(s) 403, 456
FspBI CTAG 1 cut(s) 132
GluI GCNGC 2 cut(s) 403, 456
GsaI CCCAGC 1 cut(s) 98
HapII CCGG 1 cut(s) 67
Hin1II CATG 1 cut(s) 416
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 2 cut(s) 325, 442
HinfI GANTC 2 cut(s) 299, 506
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 145, 394
Hpy188I TCNGA 3 cut(s) 9, 307, 515
Hpy188III TCNNGA 6 cut(s) 38, 81, 112, 132, 173, 179
Hpy8I GTNNAC 2 cut(s) 145, 394
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 207, 398
HpyCH4V TGCA 4 cut(s) 278, 340, 351, 384
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 124, 337, 408
Hsp92II CATG 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 193
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 175, 193
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 2 cut(s) 107, 378
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 177, 195
MboI GATC 2 cut(s) 175, 193
MboII GAAGA 4 cut(s) 21, 24, 294, 331
MfeI CAATTG 1 cut(s) 226
MluCI AATT 3 cut(s) 76, 226, 346
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 3 cut(s) 90, 144, 423
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 471
MunI CAATTG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 4 cut(s) 104, 124, 337, 408
NdeII GATC 2 cut(s) 175, 193
NlaIII CATG 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 293
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 2 cut(s) 404, 457
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 469
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 469
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 3 cut(s) 90, 144, 423
SatI GCNGC 2 cut(s) 403, 456
Sau3AI GATC 2 cut(s) 175, 193
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 471
SetI ASST 6 cut(s) 75, 225, 329, 383, 407, 446
SfaNI GCATC 2 cut(s) 107, 378
Sse9I AATT 3 cut(s) 76, 226, 346
SsiI CCGC 2 cut(s) 312, 455
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 2 cut(s) 207, 398
TaqI TCGA 2 cut(s) 80, 111
TasI AATT 3 cut(s) 76, 226, 346
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 3 cut(s) 90, 144, 423
Tru9I TTAA 3 cut(s) 90, 144, 423
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 66, 278, 498
TspGWI ACGGA 1 cut(s) 162
XapI RAATTY 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.