squalene
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0127211 RchiOBHm_Chr2g0139521 RchiOBHm_Chr4g0426021 RchiOBHm_Chr7g0215691 |
| rosa_laevigata | RLG00000013555 RLG00000022625 RLG00000025917 RLG00000026011 RLG00000031338 RLG00000035292 |
| rosa_roxburghii | Rroxscaffold_1G00061270 Rroxscaffold_2G00080310 Rroxscaffold_5G00368020 Rroxscaffold_7G00185710 Rroxscaffold_7G00209630 |
| rosa_rugosa | Rorug05G0481000 Rorug06G0001200 |
| rosa_samantha | Rh2BG287200 Rh3CG326000 Rh4DG038400 Rh4DG214600 Rh5AG514800 Rh6BG109200 Rh6BG184600 Rh6BG190000 Rh6CG109500 Rh6CG109600 Rh6CG262000 Rh6DG099200 Rh7BG146700 Rh7CG407100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 233 |
| AgsI | TTSAA | 1 cut(s) | 18 |
| AluBI | AGCT | 6 cut(s) | 88, 161, 181, 215, 258, 290 |
| AluI | AGCT | 6 cut(s) | 88, 161, 181, 215, 258, 290 |
| Alw26I | GTCTC | 3 cut(s) | 48, 152, 274 |
| AoxI | GGCC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 1 cut(s) | 178 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 246, 278 |
| AseI | ATTAAT | 1 cut(s) | 120 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 162 |
| AsuHPI | GGTGA | 1 cut(s) | 167 |
| BalI | TGGCCA | 1 cut(s) | 235 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BceAI | ACGGC | 1 cut(s) | 18 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 3 cut(s) | 48, 152, 274 |
| BisI | GCNGC | 1 cut(s) | 179 |
| BlsI | GCNGC | 1 cut(s) | 180 |
| BmsI | GCATC | 1 cut(s) | 20 |
| BpuEI | CTTGAG | 1 cut(s) | 152 |
| BseGI | GGATG | 1 cut(s) | 35 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| BshFI | GGCC | 1 cut(s) | 235 |
| BsmAI | GTCTC | 3 cut(s) | 48, 152, 274 |
| BsmBI | CGTCTC | 1 cut(s) | 274 |
| BsnI | GGCC | 1 cut(s) | 235 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspANI | GGCC | 1 cut(s) | 235 |
| BspCNI | CTCAG | 1 cut(s) | 272 |
| BspHI | TCATGA | 1 cut(s) | 166 |
| BssMI | GATC | 1 cut(s) | 3 |
| Bst6I | CTCTTC | 1 cut(s) | 277 |
| BstDEI | CTNAG | 1 cut(s) | 259 |
| BstF5I | GGATG | 1 cut(s) | 35 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMAI | GTCTC | 3 cut(s) | 48, 152, 274 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstNSI | RCATGY | 1 cut(s) | 44 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BsuRI | GGCC | 1 cut(s) | 235 |
| BtsCI | GGATG | 1 cut(s) | 35 |
| CciI | TCATGA | 1 cut(s) | 166 |
| CseI | GACGC | 1 cut(s) | 184 |
| CviAII | CATG | 3 cut(s) | 7, 41, 167 |
| CviJI | RGCY | 9 cut(s) | 67, 88, 137, 161, 181, 215, 235, 258, 290 |
| CviKI_1 | RGCY | 9 cut(s) | 67, 88, 137, 161, 181, 215, 235, 258, 290 |
| DdeI | CTNAG | 1 cut(s) | 259 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| DraI | TTTAAA | 1 cut(s) | 208 |
| EaeI | YGGCCR | 1 cut(s) | 233 |
| Eam1104I | CTCTTC | 1 cut(s) | 277 |
| EarI | CTCTTC | 1 cut(s) | 277 |
| Esp3I | CGTCTC | 1 cut(s) | 274 |
| FaeI | CATG | 3 cut(s) | 10, 44, 170 |
| FaiI | YATR | 3 cut(s) | 8, 42, 168 |
| FatI | CATG | 3 cut(s) | 6, 40, 166 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 1 cut(s) | 179 |
| FokI | GGATG | 1 cut(s) | 42 |
| Fsp4HI | GCNGC | 1 cut(s) | 179 |
| GluI | GCNGC | 1 cut(s) | 179 |
| HaeIII | GGCC | 1 cut(s) | 235 |
| HgaI | GACGC | 1 cut(s) | 184 |
| Hin1II | CATG | 3 cut(s) | 10, 44, 170 |
| HindIII | AAGCTT | 1 cut(s) | 288 |
| HphI | GGTGA | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 2 cut(s) | 111, 277 |
| Hpy188III | TCNNGA | 2 cut(s) | 131, 167 |
| HpyAV | CCTTC | 1 cut(s) | 20 |
| HpyCH4V | TGCA | 2 cut(s) | 40, 94 |
| HpyF3I | CTNAG | 1 cut(s) | 259 |
| Hsp92II | CATG | 3 cut(s) | 10, 44, 170 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LpnPI | CCDG | 4 cut(s) | 81, 84, 203, 253 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 1 cut(s) | 20 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 1 cut(s) | 264 |
| MlsI | TGGCCA | 1 cut(s) | 235 |
| MluCI | AATT | 3 cut(s) | 75, 113, 121 |
| MluNI | TGGCCA | 1 cut(s) | 235 |
| MnlI | CCTC | 2 cut(s) | 127, 152 |
| Mox20I | TGGCCA | 1 cut(s) | 235 |
| MroXI | GAANNNNTTC | 1 cut(s) | 162 |
| MscI | TGGCCA | 1 cut(s) | 235 |
| MseI | TTAA | 2 cut(s) | 120, 207 |
| Msp20I | TGGCCA | 1 cut(s) | 235 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 3 cut(s) | 10, 44, 170 |
| NspI | RCATGY | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 166 |
| PdmI | GAANNNNTTC | 1 cut(s) | 162 |
| PkrI | GCNGC | 1 cut(s) | 180 |
| PshBI | ATTAAT | 1 cut(s) | 120 |
| SaqAI | TTAA | 2 cut(s) | 120, 207 |
| SatI | GCNGC | 1 cut(s) | 179 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| SetI | ASST | 6 cut(s) | 90, 163, 183, 217, 260, 292 |
| SfaNI | GCATC | 1 cut(s) | 20 |
| SmlI | CTYRAG | 1 cut(s) | 131 |
| SmoI | CTYRAG | 1 cut(s) | 131 |
| Sse9I | AATT | 3 cut(s) | 75, 113, 121 |
| TaqII | GACCGA | 1 cut(s) | 87 |
| TasI | AATT | 3 cut(s) | 75, 113, 121 |
| Tru1I | TTAA | 2 cut(s) | 120, 207 |
| Tru9I | TTAA | 2 cut(s) | 120, 207 |
| TseI | GCWGC | 1 cut(s) | 178 |
| TspDTI | ATGAA | 2 cut(s) | 39, 155 |
| VspI | ATTAAT | 1 cut(s) | 120 |
| XceI | RCATGY | 1 cut(s) | 44 |
| XmnI | GAANNNNTTC | 1 cut(s) | 162 |