RchiOBHm_Chr2g0150721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008177
Physical Location & Seq
Reverse (-)
68362737 .. 68363145
409 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51997

Sequence Viewer

Length: 294 bp
ATGCAAGGCTTAACCACAAATCTAGAGGGTGTCTTAAAAAATACACTAACAAACCCTTTTAGAACGCGCCCCACACGCTGGTGTGTTTCTGAGAAGTTGATGTTCGGTCCGGCGGCGCGTCCTTGGGACGCTGTCGTCGGACGGGCCTGTGAGGCTACTGTGTGCACTGGCGGGGTCCTATGGCTTAGGCGCGGCCCAGGAACGGTGGTTGCAAGGTGTTCGAAGGGTTGGGTAGTTCTAGTCCGATCTGACCTTCTCTGGTCGTGGACGAGCTCAGGGATAGAGCGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.78

Weight (kDa)

10.72

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 286
AccII CGCG 3 cut(s) 67, 118, 192
AciI CCGC 4 cut(s) 113, 171, 192, 286
AfiI CCNNNNNNNGG 2 cut(s) 78, 202
AjnI CCWGG 1 cut(s) 196
AleI CACNNNNGTG 1 cut(s) 79
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw21I GWGCWC 2 cut(s) 167, 275
Alw44I GTGCAC 1 cut(s) 163
AoxI GGCC 2 cut(s) 144, 193
ApaLI GTGCAC 1 cut(s) 163
AspLEI GCGC 3 cut(s) 69, 118, 192
AspS9I GGNCC 4 cut(s) 107, 144, 175, 194
AsuII TTCGAA 1 cut(s) 221
AvaII GGWCC 2 cut(s) 107, 175
BaeGI GKGCMC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 167, 275
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BciT130I CCWGG 1 cut(s) 198
BfaI CTAG 2 cut(s) 23, 239
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 3 cut(s) 114, 193, 287
BlsI GCNGC 3 cut(s) 115, 194, 288
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 107, 175
BmgT120I GGNCC 4 cut(s) 107, 144, 175, 194
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 198
Bpu10I CCTNAGC 2 cut(s) 185, 274
Bpu14I TTCGAA 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 122, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 202
Bse1I ACTGG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 122, 196
BseLI CCNNNNNNNGG 2 cut(s) 78, 202
BseMII CTCAG 2 cut(s) 81, 288
BseNI ACTGG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 167
Bsh1236I CGCG 3 cut(s) 67, 118, 192
BshFI GGCC 2 cut(s) 146, 195
BsiHKAI GWGCWC 2 cut(s) 167, 275
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 78, 202
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 146, 195
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 167, 275
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 4 cut(s) 113, 171, 192, 286
BspANI GGCC 2 cut(s) 146, 195
BspCNI CTCAG 2 cut(s) 82, 287
BspFNI CGCG 3 cut(s) 67, 118, 192
BspLI GGNNCC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 122, 196
BssMI GATC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 160, 205
BstBI TTCGAA 1 cut(s) 221
BstDEI CTNAG 3 cut(s) 90, 185, 274
BstFNI CGCG 3 cut(s) 67, 118, 192
BstHHI GCGC 3 cut(s) 69, 118, 192
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 75, 152
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 167
BstUI CGCG 3 cut(s) 67, 118, 192
BsuRI GGCC 2 cut(s) 146, 195
BtsIMutI CAGTG 1 cut(s) 165
CfoI GCGC 3 cut(s) 69, 118, 192
Cfr13I GGNCC 4 cut(s) 107, 144, 175, 194
CpoI CGGWCCG 1 cut(s) 107
CseI GACGC 2 cut(s) 107, 137
CspI CGGWCCG 1 cut(s) 107
CviJI RGCY 6 cut(s) 9, 146, 155, 184, 195, 273
CviKI_1 RGCY 6 cut(s) 9, 146, 155, 184, 195, 273
DdeI CTNAG 3 cut(s) 90, 185, 274
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 2 cut(s) 107, 175
Eco53kI GAGCTC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 122
FaiI YATR 1 cut(s) 181
FaqI GGGAC 1 cut(s) 140
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 114, 193, 287
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 114, 193, 287
FspBI CTAG 2 cut(s) 23, 239
GlaI GCGC 3 cut(s) 68, 117, 191
GluI GCNGC 3 cut(s) 114, 193, 287
HaeIII GGCC 2 cut(s) 146, 195
HapII CCGG 1 cut(s) 110
HgaI GACGC 2 cut(s) 107, 137
HhaI GCGC 3 cut(s) 69, 118, 192
Hin6I GCGC 3 cut(s) 67, 116, 190
HinP1I GCGC 3 cut(s) 67, 116, 190
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 165, 267
Hpy188I TCNGA 4 cut(s) 91, 140, 245, 250
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 2 cut(s) 165, 267
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 217, 263
HpyCH4III ACNGT 2 cut(s) 160, 205
HpyCH4V TGCA 3 cut(s) 4, 165, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 152
HpyF3I CTNAG 3 cut(s) 90, 185, 274
HspAI GCGC 3 cut(s) 67, 116, 190
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 8 cut(s) 64, 123, 153, 160, 183, 210, 244, 261
MaeI CTAG 2 cut(s) 23, 239
MalI GATC 1 cut(s) 247
MbiI CCGCTC 1 cut(s) 286
MboI GATC 1 cut(s) 245
MhlI GDGCHC 2 cut(s) 167, 275
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 2 cut(s) 19, 145
MseI TTAA 2 cut(s) 11, 35
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 3 cut(s) 67, 118, 192
MwoI GCNNNNNNNGC 2 cut(s) 75, 152
NdeII GATC 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 176
NspV TTCGAA 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 3 cut(s) 115, 194, 288
PpuMI RGGWCCY 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 4 cut(s) 107, 144, 175, 194
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 79
Rsr2I CGGWCCG 1 cut(s) 107
RsrII CGGWCCG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 11, 35
SatI GCNGC 3 cut(s) 114, 193, 287
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 4 cut(s) 107, 144, 175, 194
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 2 cut(s) 167, 275
SetI ASST 3 cut(s) 218, 255, 275
SfuI TTCGAA 1 cut(s) 221
SinI GGWCC 2 cut(s) 107, 175
SmiMI CAYNNNNRTG 1 cut(s) 79
SsiI CCGC 4 cut(s) 113, 171, 192, 286
SspMI CTAG 2 cut(s) 23, 239
SstI GAGCTC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 160, 205
TaqI TCGA 1 cut(s) 221
TaqII GACCGA 1 cut(s) 95
TauI GCSGC 3 cut(s) 116, 195, 289
Tru1I TTAA 2 cut(s) 11, 35
Tru9I TTAA 2 cut(s) 11, 35
TscAI CASTG 1 cut(s) 172
TspRI CASTG 1 cut(s) 172
Tth111I GACNNNGTC 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 78
VneI GTGCAC 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 107, 175
XbaI TCTAGA 1 cut(s) 22
XspI CTAG 2 cut(s) 23, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.