Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Reverse (-)

16397543 .. 16399292

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTCCGTCCGGCTGCACGTCCTTGTGGCGCTGTTGTTGGACGGGCCTGTGAGGTTACGGTGTGTACTGGCGGGGTTCTAAGGCTTAGGCGCGGCTCGGGAAAGGTGGATGCAAGGTGTATTTTGGGTTGGGCAGATCTACTCCGATCTGATCTTCTTTGGTCATGGGTGAGCACAAGGATAGAGTGGCGAGGATGGGTTGCTGGCCGGCGGCGAGATCTGGGGTCACAGTCTCCTTTATTGATCGGGTTTCTGCCTGAGTTGATTGGGTTGGTTGGATCGGGGCTTCGATCTCCTGGCAGAGGCGATCCCGAAAGTGATCTGTCGTGGCTTAAGGTCCAGCCTCTAATGGCAGTGGAGATCGTTGGTGGGCGGCGTGGAAATACCGGATTGATGACACCGGTTAGTTGGCGACGGAATTGGTGGCGGGATTGGAAGCCTGCAACTCGTTGGCGGCGGAGTTGGTGCTGGGATTGGAGGATTGCAACTCTAGAATTCCTTGGGGAGGTTGGAGTTGCTATTGATAGCAAAGGAAGGTTGTGTTCTTCTTGTGGTGGCGGCCCCGATCGTGTTGGAGGTCAGGCGTTAGCCTTTGGTGGTACGTGCGTTTTGGCTGTCGGTGGAGGATGGCTTCCAGATCGAGCAGCGATCAAGTTTGGTGATCAGGATTCGATCCTTGGATCCTCGGTGGCAGTGGTTTTATCAGCTACCAATGTTGATGGGTTTGAAAACCAGATTAAGATGGTGTCAGGTAGTGCTGATGTCGGTGGAGCTGCTAACATAGTTTGGTGGGCTGTGGCTATCGGACGACAGGTCTCTAATGTCAGTGATGTAGATCTGGGCCGGCTTGTTGGAAGGCATGGTGATGGTCTTGTCGTTGGTGGTGGCGCCCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.05

Weight (kDa)

9.68

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	887
AccII	CGCG	1 cut(s)	93
AciI	CCGC	8 cut(s)	72, 93, 211, 373, 427, 454, 457, 558
AclWI	GGATC	5 cut(s)	286, 302, 667, 675, 688
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	888
AfaI	GTAC	2 cut(s)	67, 601
AfiI	CCNNNNNNNGG	2 cut(s)	302, 505
AflII	CTTAAG	1 cut(s)	332
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	728
AhdI	GACNNNNNGTC	1 cut(s)	812
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	707, 773
AluI	AGCT	2 cut(s)	707, 773
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	2 cut(s)	237, 820
AlwI	GGATC	5 cut(s)	286, 302, 667, 675, 688
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	4 cut(s)	45, 205, 559, 841
ApeKI	GCWGC	3 cut(s)	14, 644, 773
ApoI	RAATTY	1 cut(s)	494
AsiGI	ACCGGT	1 cut(s)	400
AspLEI	GCGC	3 cut(s)	32, 93, 890
AspS9I	GGNCC	4 cut(s)	45, 337, 560, 841
AsuHPI	GGTGA	3 cut(s)	181, 671, 875
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	337
BaeI	ACNNNNGTAYC	2 cut(s)	591, 624
BamHI	GGATCC	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	656, 760
BccI	CCATC	5 cut(s)	189, 621, 713, 736, 860
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	2 cut(s)	237, 820
BfaI	CTAG	1 cut(s)	491
BfoI	RGCGCY	2 cut(s)	33, 891
BfrI	CTTAAG	1 cut(s)	332
BglII	AGATCT	3 cut(s)	136, 217, 835
BisI	GCNGC	8 cut(s)	15, 94, 212, 374, 455, 559, 645, 774
BlsI	GCNGC	8 cut(s)	16, 95, 213, 375, 456, 560, 646, 775
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	337
BmeRI	GACNNNNNGTC	1 cut(s)	812
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	4 cut(s)	45, 337, 560, 841
BmiI	GGNNCC	3 cut(s)	562, 682, 889
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	888
BsaI	GGTCTC	1 cut(s)	820
BsaJI	CCNNGG	3 cut(s)	499, 676, 684
BsaWI	WCCGGW	2 cut(s)	386, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 505
Bse118I	RCCGGY	3 cut(s)	207, 400, 843
Bse1I	ACTGG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	3 cut(s)	499, 676, 684
BseGI	GGATG	3 cut(s)	115, 200, 632
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	2 cut(s)	302, 505
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	656, 760
BseYI	CCCAGC	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	4 cut(s)	47, 207, 561, 843
BshNI	GGYRCC	1 cut(s)	887
BshTI	ACCGGT	1 cut(s)	400
BsiEI	CGRYCG	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	5 cut(s)	11, 208, 387, 401, 844
BslI	CCNNNNNNNGG	2 cut(s)	302, 505
BsmAI	GTCTC	2 cut(s)	237, 820
BsnI	GGCC	4 cut(s)	47, 207, 561, 843
Bso31I	GGTCTC	1 cut(s)	820
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	176
BspACI	CCGC	8 cut(s)	72, 93, 211, 373, 427, 454, 457, 558
BspANI	GGCC	4 cut(s)	47, 207, 561, 843
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	562, 682, 889
BspPI	GGATC	5 cut(s)	286, 302, 667, 675, 688
BspT107I	GGYRCC	1 cut(s)	887
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	820
BsrFI	RCCGGY	3 cut(s)	207, 400, 843
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	3 cut(s)	207, 400, 843
BssECI	CCNNGG	3 cut(s)	499, 676, 684
BssNI	GRCGYC	1 cut(s)	888
BssT1I	CCWWGG	2 cut(s)	499, 676
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	61, 231
BstACI	GRCGYC	1 cut(s)	888
BstAFI	CTTAAG	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	4 cut(s)	205, 209, 441, 845
BstDEI	CTNAG	3 cut(s)	80, 86, 258
BstENI	CCTNNNNNAGG	2 cut(s)	300, 503
BstF5I	GGATG	3 cut(s)	115, 200, 632
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	2 cut(s)	33, 891
BstHHI	GCGC	3 cut(s)	32, 93, 890
BstMAI	GTCTC	2 cut(s)	237, 820
BstMCI	CGRYCG	1 cut(s)	568
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	656, 760
BstX2I	RGATCY	4 cut(s)	136, 217, 680, 835
BstYI	RGATCY	4 cut(s)	136, 217, 680, 835
BsuRI	GGCC	4 cut(s)	47, 207, 561, 843
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	115, 200, 632
BtsI	GCAGTG	2 cut(s)	360, 699
BtsIMutI	CAGTG	3 cut(s)	360, 699, 832
Cac8I	GCNNGC	4 cut(s)	205, 209, 441, 845
CfoI	GCGC	3 cut(s)	32, 93, 890
Cfr10I	RCCGGY	3 cut(s)	207, 400, 843
Cfr13I	GGNCC	4 cut(s)	45, 337, 560, 841
Csp6I	GTAC	2 cut(s)	66, 600
CspAI	ACCGGT	1 cut(s)	400
CviAII	CATG	2 cut(s)	165, 860
CviQI	GTAC	2 cut(s)	66, 600
DdeI	CTNAG	3 cut(s)	80, 86, 258
DinI	GGCGCC	1 cut(s)	889
DriI	GACNNNNNGTC	1 cut(s)	812
EaeI	YGGCCR	1 cut(s)	205
Eam1105I	GACNNNNNGTC	1 cut(s)	812
EciI	GGCGGA	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	499, 676
Eco31I	GGTCTC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	2 cut(s)	300, 503
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	499, 676
EgeI	GGCGCC	1 cut(s)	889
EheI	GGCGCC	1 cut(s)	889
ErhI	CCWWGG	2 cut(s)	499, 676
FaeI	CATG	2 cut(s)	168, 863
FaiI	YATR	3 cut(s)	166, 782, 861
FatI	CATG	2 cut(s)	164, 859
FauI	CCCGC	2 cut(s)	65, 420
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	8 cut(s)	15, 94, 212, 374, 455, 559, 645, 774
FokI	GGATG	3 cut(s)	122, 207, 639
Fsp4HI	GCNGC	8 cut(s)	15, 94, 212, 374, 455, 559, 645, 774
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	3 cut(s)	31, 92, 889
GluI	GCNGC	8 cut(s)	15, 94, 212, 374, 455, 559, 645, 774
GsaI	CCCAGC	1 cut(s)	472
HaeII	RGCGCY	2 cut(s)	33, 891
HaeIII	GGCC	4 cut(s)	47, 207, 561, 843
HapII	CCGG	5 cut(s)	11, 208, 387, 401, 844
HhaI	GCGC	3 cut(s)	32, 93, 890
Hin1I	GRCGYC	1 cut(s)	888
Hin1II	CATG	2 cut(s)	168, 863
Hin6I	GCGC	3 cut(s)	30, 91, 888
HinP1I	GCGC	3 cut(s)	30, 91, 888
HinfI	GANTC	1 cut(s)	668
HpaII	CCGG	5 cut(s)	11, 208, 387, 401, 844
HphI	GGTGA	3 cut(s)	181, 671, 875
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	146, 151, 806
Hpy188III	TCNNGA	5 cut(s)	99, 311, 491, 635, 665
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	528, 849
HpyCH4III	ACNGT	2 cut(s)	61, 231
HpyCH4IV	ACGT	2 cut(s)	19, 602
HpyCH4V	TGCA	4 cut(s)	17, 113, 443, 485
HpyF3I	CTNAG	3 cut(s)	80, 86, 258
HpySE526I	ACGT	2 cut(s)	19, 602
Hsp92I	GRCGYC	1 cut(s)	888
Hsp92II	CATG	2 cut(s)	168, 863
HspAI	GCGC	3 cut(s)	30, 91, 888
KasI	GGCGCC	1 cut(s)	887
KroI	GCCGGC	2 cut(s)	207, 843
KroNI	GCCGGC	2 cut(s)	209, 845
Ksp22I	TGATCA	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	2 cut(s)	656, 760
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	2 cut(s)	19, 602
MaeIII	GTNAC	2 cut(s)	55, 225
MboII	GAAGA	2 cut(s)	146, 537
MflI	RGATCY	4 cut(s)	136, 217, 680, 835
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	2 cut(s)	418, 494
Mly113I	GGCGCC	1 cut(s)	888
MmeI	TCCRAC	5 cut(s)	19, 256, 490, 553, 832
MnlI	CCTC	9 cut(s)	46, 185, 296, 354, 471, 499, 569, 617, 694
MroNI	GCCGGC	2 cut(s)	207, 843
MseI	TTAA	2 cut(s)	333, 738
MslI	CAYNNNNRTG	1 cut(s)	864
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	5 cut(s)	11, 208, 387, 401, 844
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	93
NaeI	GCCGGC	2 cut(s)	209, 845
NarI	GGCGCC	1 cut(s)	888
NgoMIV	GCCGGC	2 cut(s)	207, 843
NlaIII	CATG	2 cut(s)	168, 863
NlaIV	GGNNCC	3 cut(s)	562, 682, 889
NmuCI	GTSAC	1 cut(s)	225
PdiI	GCCGGC	2 cut(s)	209, 845
PfeI	GAWTC	1 cut(s)	668
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	8 cut(s)	16, 95, 213, 375, 456, 560, 646, 775
Ple19I	CGATCG	1 cut(s)	568
PluTI	GGCGCC	1 cut(s)	891
Ppu21I	YACGTR	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	562, 682, 889
PspPI	GGNCC	4 cut(s)	45, 337, 560, 841
PsuI	RGATCY	4 cut(s)	136, 217, 680, 835
PvuI	CGATCG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	67, 601
RsaNI	GTAC	2 cut(s)	66, 600
RseI	CAYNNNNRTG	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	333, 738
SatI	GCNGC	8 cut(s)	15, 94, 212, 374, 455, 559, 645, 774
Sau96I	GGNCC	4 cut(s)	45, 337, 560, 841
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	100
SfoI	GGCGCC	1 cut(s)	889
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	418, 494
SsiI	CCGC	8 cut(s)	72, 93, 211, 373, 427, 454, 457, 558
SspDI	GGCGCC	1 cut(s)	887
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	499, 676
TaaI	ACNGT	2 cut(s)	61, 231
TaiI	ACGT	2 cut(s)	22, 605
TaqI	TCGA	3 cut(s)	289, 640, 671
TasI	AATT	2 cut(s)	418, 494
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	5 cut(s)	96, 214, 376, 457, 561
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	2 cut(s)	333, 738
Tru9I	TTAA	2 cut(s)	333, 738
TscAI	CASTG	3 cut(s)	360, 699, 832
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	3 cut(s)	14, 644, 773
Tsp45I	GTSAC	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	3 cut(s)	360, 699, 832
Vha464I	CTTAAG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	337
XagI	CCTNNNNNAGG	2 cut(s)	300, 503
XapI	RAATTY	1 cut(s)	494
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.