RNA polymerase II-associated factor 1 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361 |
| rosa_multiflora | Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00036080 |
| rosa_rugosa | Rorug04G0203200 |
| rosa_samantha | Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700 |
| rosa_wichuraiana | Rw5G028010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 104 |
| AfaI | GTAC | 1 cut(s) | 189 |
| AgsI | TTSAA | 1 cut(s) | 179 |
| AjnI | CCWGG | 1 cut(s) | 48 |
| AluBI | AGCT | 1 cut(s) | 130 |
| AluI | AGCT | 1 cut(s) | 130 |
| Alw21I | GWGCWC | 1 cut(s) | 121 |
| Alw44I | GTGCAC | 1 cut(s) | 117 |
| AlwI | GGATC | 1 cut(s) | 104 |
| ApaLI | GTGCAC | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 1 cut(s) | 59 |
| BaeGI | GKGCMC | 1 cut(s) | 121 |
| Bbv12I | GWGCWC | 1 cut(s) | 121 |
| BccI | CCATC | 1 cut(s) | 72 |
| BciT130I | CCWGG | 1 cut(s) | 50 |
| BfaI | CTAG | 1 cut(s) | 211 |
| Bme1390I | CCNGG | 1 cut(s) | 50 |
| BmrFI | CCNGG | 1 cut(s) | 50 |
| Bse1I | ACTGG | 1 cut(s) | 204 |
| BseBI | CCWGG | 1 cut(s) | 50 |
| BseNI | ACTGG | 1 cut(s) | 204 |
| BseSI | GKGCMC | 1 cut(s) | 121 |
| BsiHKAI | GWGCWC | 1 cut(s) | 121 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp143I | GATC | 2 cut(s) | 109, 154 |
| BspPI | GGATC | 1 cut(s) | 104 |
| BsrI | ACTGG | 1 cut(s) | 204 |
| BssMI | GATC | 2 cut(s) | 109, 154 |
| Bst2UI | CCWGG | 1 cut(s) | 50 |
| BstDEI | CTNAG | 1 cut(s) | 77 |
| BstKTI | GATC | 2 cut(s) | 112, 157 |
| BstMBI | GATC | 2 cut(s) | 109, 154 |
| BstNI | CCWGG | 1 cut(s) | 50 |
| BstSCI | CCNGG | 1 cut(s) | 48 |
| BstSLI | GKGCMC | 1 cut(s) | 121 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| CsiI | ACCWGGT | 1 cut(s) | 48 |
| Csp6I | GTAC | 1 cut(s) | 188 |
| CviAII | CATG | 2 cut(s) | 133, 139 |
| CviJI | RGCY | 4 cut(s) | 39, 130, 166, 171 |
| CviKI_1 | RGCY | 4 cut(s) | 39, 130, 166, 171 |
| CviQI | GTAC | 1 cut(s) | 188 |
| DdeI | CTNAG | 1 cut(s) | 77 |
| DpnI | GATC | 2 cut(s) | 111, 156 |
| DpnII | GATC | 2 cut(s) | 109, 154 |
| Eco32I | GATATC | 1 cut(s) | 15 |
| EcoRII | CCWGG | 1 cut(s) | 48 |
| EcoRV | GATATC | 1 cut(s) | 15 |
| FaeI | CATG | 2 cut(s) | 136, 142 |
| FaiI | YATR | 4 cut(s) | 23, 56, 134, 140 |
| FatI | CATG | 2 cut(s) | 132, 138 |
| FspBI | CTAG | 1 cut(s) | 211 |
| Hin1II | CATG | 2 cut(s) | 136, 142 |
| HinfI | GANTC | 1 cut(s) | 90 |
| HphI | GGTGA | 1 cut(s) | 59 |
| Hpy166II | GTNNAC | 1 cut(s) | 119 |
| Hpy188III | TCNNGA | 2 cut(s) | 94, 107 |
| Hpy8I | GTNNAC | 1 cut(s) | 119 |
| HpyCH4V | TGCA | 1 cut(s) | 119 |
| HpyF3I | CTNAG | 1 cut(s) | 77 |
| Hsp92II | CATG | 2 cut(s) | 136, 142 |
| Kzo9I | GATC | 2 cut(s) | 109, 154 |
| LpnPI | CCDG | 5 cut(s) | 35, 62, 107, 120, 185 |
| MabI | ACCWGGT | 1 cut(s) | 48 |
| MaeI | CTAG | 1 cut(s) | 211 |
| MalI | GATC | 2 cut(s) | 111, 156 |
| MboI | GATC | 2 cut(s) | 109, 154 |
| MboII | GAAGA | 1 cut(s) | 154 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MluCI | AATT | 1 cut(s) | 204 |
| MnlI | CCTC | 1 cut(s) | 80 |
| MslI | CAYNNNNRTG | 1 cut(s) | 137 |
| MspR9I | CCNGG | 1 cut(s) | 50 |
| MvaI | CCWGG | 1 cut(s) | 50 |
| NdeII | GATC | 2 cut(s) | 109, 154 |
| NlaIII | CATG | 2 cut(s) | 136, 142 |
| PfeI | GAWTC | 1 cut(s) | 90 |
| Psp6I | CCWGG | 1 cut(s) | 48 |
| PspGI | CCWGG | 1 cut(s) | 48 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 171, 203 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 1 cut(s) | 189 |
| RsaNI | GTAC | 1 cut(s) | 188 |
| RseI | CAYNNNNRTG | 1 cut(s) | 137 |
| Sau3AI | GATC | 2 cut(s) | 109, 154 |
| ScrFI | CCNGG | 1 cut(s) | 50 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SetI | ASST | 3 cut(s) | 51, 72, 132 |
| SexAI | ACCWGGT | 1 cut(s) | 48 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 137 |
| Sse9I | AATT | 1 cut(s) | 204 |
| SspMI | CTAG | 1 cut(s) | 211 |
| StyD4I | CCNGG | 1 cut(s) | 48 |
| TasI | AATT | 1 cut(s) | 204 |
| TatI | WGTACW | 1 cut(s) | 187 |
| TfiI | GAWTC | 1 cut(s) | 90 |
| TspDTI | ATGAA | 2 cut(s) | 38, 155 |
| VneI | GTGCAC | 1 cut(s) | 117 |
| XspI | CTAG | 1 cut(s) | 211 |