Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Forward (+)

18563684 .. 18564034

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTTGGGTTGGGTAGATCTGTTCCGGTCTGACCTTTTCCGGTCGTGGGCGAGCACAGGGGTAGAACGGCGTGGGGGTATCAGTCGGTGGCGAGATCGGTGGTCACAGTCCCCTGCGGTGATCGGATTGCTGCCTGAGTTGATCGGCTTGGGTATATTTGGGCTTCGATCTCCTAGCAGAGGCAATCCCGACAGGGATCTGTCGCTCCTTGAGGTCCGGCCTCTGATGCTAGCTGAGATCGATGATTGGTGGTGTGGTAATGCAGGGTTCCGGTTCGTTGGTGGCAGAATTGGTGGCGGGGATGGGCGTCTGCAGCTCATTGGAGGTGGAGTTGGTGGCGGGATTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.57

Weight (kDa)

9.91

Isoelectric Point (pI)

63.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	116, 297, 339
AclWI	GGATC	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	46, 179
AluBI	AGCT	2 cut(s)	233, 316
AluI	AGCT	2 cut(s)	233, 316
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	130, 313
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	117, 325
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	174, 230
BfmI	CTRYAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	2 cut(s)	131, 314
BlsI	GCNGC	2 cut(s)	132, 315
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	269
BmsI	GCATC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	307
BsaWI	WCCGGW	3 cut(s)	24, 39, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 179
BseCI	ATCGAT	1 cut(s)	240
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	46, 179
BseMII	CTCAG	2 cut(s)	126, 225
BseXI	GCAGC	2 cut(s)	117, 325
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	4 cut(s)	25, 40, 217, 271
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	46, 179
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
BspACI	CCGC	3 cut(s)	116, 297, 339
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	2 cut(s)	127, 226
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	269
BspMAI	CTGCAG	1 cut(s)	315
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	204
BssMI	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
BssNI	GRCGYC	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	52, 231
BstDEI	CTNAG	2 cut(s)	135, 234
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	7 cut(s)	19, 97, 123, 144, 170, 199, 240
BstMBI	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 313, 345
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	117, 325
BstX2I	RGATCY	2 cut(s)	16, 196
BstYI	RGATCY	2 cut(s)	16, 196
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	52, 231
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	296
CviJI	RGCY	6 cut(s)	147, 163, 220, 233, 316, 348
CviKI_1	RGCY	6 cut(s)	147, 163, 220, 233, 316, 348
DdeI	CTNAG	2 cut(s)	135, 234
DpnI	GATC	7 cut(s)	18, 96, 122, 143, 169, 198, 239
DpnII	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
Eco47I	GGWCC	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	177
FaiI	YATR	1 cut(s)	155
FaqI	GGGAC	1 cut(s)	94
FauI	CCCGC	2 cut(s)	290, 332
Fnu4HI	GCNGC	2 cut(s)	131, 314
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	131, 314
FspBI	CTAG	2 cut(s)	174, 230
GluI	GCNGC	2 cut(s)	131, 314
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	4 cut(s)	25, 40, 217, 271
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	307
HpaII	CCGG	4 cut(s)	25, 40, 217, 271
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	31, 125, 225
Hpy188III	TCNNGA	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	263, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 313, 345
HpyF3I	CTNAG	2 cut(s)	135, 234
Hsp92I	GRCGYC	1 cut(s)	307
Kzo9I	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	9 cut(s)	38, 42, 53, 126, 147, 178, 230, 249, 284
Lsp1109I	GCAGC	2 cut(s)	117, 325
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	2 cut(s)	174, 230
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	7 cut(s)	18, 96, 122, 143, 169, 198, 239
MboI	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
MflI	RGATCY	2 cut(s)	16, 196
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	288
MnlI	CCTC	4 cut(s)	173, 205, 231, 317
MspI	CCGG	4 cut(s)	25, 40, 217, 271
MwoI	GCNNNNNNNGC	3 cut(s)	226, 313, 345
NdeII	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
NheI	GCTAGC	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	132, 315
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	2 cut(s)	16, 196
SatI	GCNGC	2 cut(s)	131, 314
Sau3AI	GATC	7 cut(s)	16, 94, 120, 141, 167, 196, 237
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	5 cut(s)	36, 216, 235, 318, 328
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	116, 297, 339
SspMI	CTAG	2 cut(s)	174, 230
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	166, 240
TasI	AATT	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	2 cut(s)	130, 313
Tsp45I	GTSAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	177
XspI	CTAG	2 cut(s)	174, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.