Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Forward (+)

14424111 .. 14426182

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGATTGACATTGGAGTATAATGAATTCTATATGGCCCAAATGACAGAGTTCCTCACAAGTATGAGCACACCAGAAGAAGAACCACAGTGCCGCATGTGTGGGTGGTATTTTACGAGGCAGGAGATAGAACATTATTCTCCATCTCGGAGGGATGGGATTAGCAGGAAGAAAGAGACAGAATTGCGCGATTTATGTTGCTCGTATCTTAAAGAGCTTGGCATGAGGCTTGAATTATGGTCACAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

83

Amino Acids

10.03

Weight (kDa)

4.96

Isoelectric Point (pI)

85.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	2 cut(s)	217, 247
AluI	AGCT	2 cut(s)	217, 247
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	71
BccI	CCATC	2 cut(s)	149, 151
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	37
BseGI	GGATG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	100
BstUI	CGCG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	37
CviAII	CATG	2 cut(s)	97, 223
CviJI	RGCY	4 cut(s)	38, 217, 229, 247
CviKI_1	RGCY	4 cut(s)	38, 217, 229, 247
EcoRI	GAATTC	1 cut(s)	26
FaeI	CATG	2 cut(s)	100, 226
FaiI	YATR	8 cut(s)	21, 33, 35, 65, 98, 196, 224, 238
FatI	CATG	2 cut(s)	96, 222
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	94
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	100, 226
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	100, 226
HspAI	GCGC	1 cut(s)	187
LpnPI	CCDG	3 cut(s)	87, 107, 151
MaeIII	GTNAC	1 cut(s)	240
MboII	GAAGA	3 cut(s)	89, 92, 181
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	26, 182, 233
MnlI	CCTC	4 cut(s)	65, 111, 144, 219
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	189
NlaIII	CATG	2 cut(s)	100, 226
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	2 cut(s)	219, 249
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	26, 182, 233
SsiI	CCGC	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	90
TasI	AATT	3 cut(s)	26, 182, 233
TauI	GCSGC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.