Rroxscaffold_1G00036080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008177
Physical Location & Seq
Forward (+)
52731037 .. 52735469
4433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036080.1

Sequence Viewer

Length: 399 bp
ATGAACGACGACAGCAAGTTCATGTTGTGTAGTTTACAAGAACTTGATGTTGAGAATTGGGGTATGGAAACAAAGGTTGAGAGCAATGCTAAGGTTCCTTGGCGGCGTTCGGCAATTTTGGGTAGAGGGTTTGTATTTTCTGCTCTCTCTATCTACCTTGTGGATGACGGCAGCGGTGGAAGGTTTCTTGATCGCCGAAAGGGTGGGGTGATAGGAACGAGATTGCTCCTTGTTCCTTTGGTTGTCTTTGCTAGTGAAGGCCGGTGGCACGCTTGCAACAGCGGCCCGGATCAAGTAGTTAGGGTACCGACCCTTGGTGGCACGTCGACTACTATTGTTAGTGACGATGGAGAGGTTGCAGTTAGATTTGCAGCTGGGGGTACCGTTAATCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.25

Weight (kDa)

6.57

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 304, 380
AccB1I GGYRCC 2 cut(s) 304, 380
AccI GTMKAC 1 cut(s) 326
AciI CCGC 3 cut(s) 103, 174, 282
AclWI GGATC 1 cut(s) 297
AfaI GTAC 2 cut(s) 306, 382
AfiI CCNNNNNNNGG 1 cut(s) 314
AjiI CACGTC 1 cut(s) 324
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
AlwI GGATC 1 cut(s) 297
AoxI GGCC 2 cut(s) 259, 283
ApeKI GCWGC 2 cut(s) 171, 371
Asp718I GGTACC 2 cut(s) 304, 380
AspS9I GGNCC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 220
BanI GGYRCC 2 cut(s) 304, 380
BbvI GCAGC 2 cut(s) 183, 383
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 287
BfaI CTAG 1 cut(s) 252
BisI GCNGC 4 cut(s) 104, 172, 283, 372
BlsI GCNGC 4 cut(s) 105, 173, 284, 373
Bme1390I CCNGG 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 3 cut(s) 96, 306, 382
BmrFI CCNGG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 98, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 98, 313
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 183, 383
BseYI CCCAGC 1 cut(s) 374
BshFI GGCC 2 cut(s) 261, 285
BshNI GGYRCC 2 cut(s) 304, 380
BsiSI CCGG 2 cut(s) 262, 287
BslI CCNNNNNNNGG 1 cut(s) 314
BsnI GGCC 2 cut(s) 261, 285
Bsp143I GATC 2 cut(s) 190, 289
BspACI CCGC 3 cut(s) 103, 174, 282
BspANI GGCC 2 cut(s) 261, 285
BspLI GGNNCC 3 cut(s) 96, 306, 382
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 2 cut(s) 304, 380
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 98, 313
BssMI GATC 2 cut(s) 190, 289
BssT1I CCWWGG 2 cut(s) 98, 313
Bst4CI ACNGT 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 270, 274
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 193, 292
BstMBI GATC 2 cut(s) 190, 289
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 183, 383
BsuRI GGCC 2 cut(s) 261, 285
BtrI CACGTC 1 cut(s) 324
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 270, 274
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 305, 381
CviAII CATG 1 cut(s) 22
CviJI RGCY 3 cut(s) 261, 285, 374
CviKI_1 RGCY 3 cut(s) 261, 285, 374
CviQI GTAC 2 cut(s) 305, 381
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 192, 291
DpnII GATC 2 cut(s) 190, 289
Eco130I CCWWGG 2 cut(s) 98, 313
EcoT14I CCWWGG 2 cut(s) 98, 313
ErhI CCWWGG 2 cut(s) 98, 313
FaeI CATG 1 cut(s) 25
FaiI YATR 2 cut(s) 23, 65
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 4 cut(s) 104, 172, 283, 372
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 104, 172, 283, 372
FspBI CTAG 1 cut(s) 252
GluI GCNGC 4 cut(s) 104, 172, 283, 372
GsaI CCCAGC 1 cut(s) 378
HaeIII GGCC 2 cut(s) 261, 285
HapII CCGG 2 cut(s) 262, 287
Hin1II CATG 1 cut(s) 25
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HpaII CCGG 2 cut(s) 262, 287
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 35, 327
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 35, 327
Hpy99I CGWCG 2 cut(s) 11, 328
HpyAV CCTTC 2 cut(s) 174, 251
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 276, 359, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 1 cut(s) 25
KpnI GGTACC 2 cut(s) 308, 384
Kzo9I GATC 2 cut(s) 190, 289
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 3 cut(s) 275, 300, 360
Lsp1109I GCAGC 2 cut(s) 183, 383
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 192, 291
MboI GATC 2 cut(s) 190, 289
MluCI AATT 2 cut(s) 55, 114
MnlI CCTC 2 cut(s) 119, 346
MseI TTAA 1 cut(s) 387
MspA1I CMGCKG 3 cut(s) 174, 282, 374
MspI CCGG 2 cut(s) 262, 287
MspR9I CCNGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 287
NdeII GATC 2 cut(s) 190, 289
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 3 cut(s) 96, 306, 382
NmuCI GTSAC 1 cut(s) 341
PkrI GCNGC 4 cut(s) 105, 173, 284, 373
PspFI CCCAGC 1 cut(s) 374
PspN4I GGNNCC 3 cut(s) 96, 306, 382
PspPI GGNCC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 306, 382
RsaNI GTAC 2 cut(s) 305, 381
SalI GTCGAC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 4 cut(s) 104, 172, 283, 372
Sau3AI GATC 2 cut(s) 190, 289
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 287
SetI ASST 7 cut(s) 78, 96, 159, 185, 326, 357, 376
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 2 cut(s) 55, 114
SsiI CCGC 3 cut(s) 103, 174, 282
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 2 cut(s) 98, 313
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 326
TasI AATT 2 cut(s) 55, 114
TauI GCSGC 2 cut(s) 106, 285
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 171, 371
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 10, 17
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.