Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Reverse (-)

66305841 .. 66306218

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG458400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTTTGTCCGGCGGTGCTTCCCTGTGGCGCTGTCGTCAGACGGACCTGTGAGATTACTGTGTGCACTGGCGGGGTTCTGCAACTTAGGCGCAGCTCGGGAAAGGTGGATGCAAGGTGTATTTTCGGTTGGGCAAATCTACTCCGATCTGACCTTCTTTGGTCATGGGTGAGCACAAGGATAGAGCGGCGAGGATGGGTTGTTGGCCGGCAGCAAGATATGGGGTCACAGTCTCCTTTATTGATCGGGTTTCTGCCTGAGTTGATTGGGTTCAATCTCCTGGCAGAGGCGATCCAGAAAGAGATCTGTCGTGGCTTGTGGTATGGACTCCGATGGCAGTGGAGATCGTTGGTGGGCGGCGTGGGAATACTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.04

Weight (kDa)

9.42

Isoelectric Point (pI)

74.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	187
AciI	CCGC	4 cut(s)	14, 72, 187, 357
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw21I	GWGCWC	2 cut(s)	68, 176
Alw26I	GTCTC	1 cut(s)	237
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	93, 211
AspLEI	GCGC	2 cut(s)	32, 93
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	68, 176
BbvI	GCAGC	2 cut(s)	105, 223
BccI	CCATC	2 cut(s)	189, 327
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	33
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	4 cut(s)	94, 188, 212, 358
BlsI	GCNGC	4 cut(s)	95, 189, 213, 359
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	73, 375
BseBI	CCWGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	115, 200
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	73, 375
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	105, 223
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	68, 176
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	11, 208
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	68, 176
Bsp143I	GATC	5 cut(s)	146, 243, 291, 303, 344
BspACI	CCGC	4 cut(s)	14, 72, 187, 357
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	73, 375
BssAI	RCCGGY	1 cut(s)	207
BssMI	GATC	5 cut(s)	146, 243, 291, 303, 344
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	61, 231
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	86, 258
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	115, 200
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	32, 93
BstKTI	GATC	5 cut(s)	149, 246, 294, 306, 347
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	5 cut(s)	146, 243, 291, 303, 344
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	105, 223
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	115, 200
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	66, 344
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	2 cut(s)	32, 93
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	45
CviAII	CATG	1 cut(s)	165
CviJI	RGCY	3 cut(s)	96, 207, 315
CviKI_1	RGCY	3 cut(s)	96, 207, 315
DdeI	CTNAG	2 cut(s)	86, 258
DpnI	GATC	5 cut(s)	148, 245, 293, 305, 346
DpnII	GATC	5 cut(s)	146, 243, 291, 303, 344
EaeI	YGGCCR	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	168
FaiI	YATR	3 cut(s)	166, 221, 324
FatI	CATG	1 cut(s)	164
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	4 cut(s)	94, 188, 212, 358
FokI	GGATG	2 cut(s)	122, 207
Fsp4HI	GCNGC	4 cut(s)	94, 188, 212, 358
GlaI	GCGC	2 cut(s)	31, 92
GluI	GCNGC	4 cut(s)	94, 188, 212, 358
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	11, 208
HhaI	GCGC	2 cut(s)	32, 93
Hin1II	CATG	1 cut(s)	168
Hin6I	GCGC	2 cut(s)	30, 91
HinP1I	GCGC	2 cut(s)	30, 91
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	11, 208
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	4 cut(s)	41, 146, 151, 332
Hpy188III	TCNNGA	2 cut(s)	99, 295
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	61, 231
HpyCH4V	TGCA	3 cut(s)	66, 82, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	86, 258
Hsp92II	CATG	1 cut(s)	168
HspAI	GCGC	2 cut(s)	30, 91
KroI	GCCGGC	1 cut(s)	207
KroNI	GCCGGC	1 cut(s)	209
Kzo9I	GATC	5 cut(s)	146, 243, 291, 303, 344
Lsp1109I	GCAGC	2 cut(s)	105, 223
LweI	GCATC	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	5 cut(s)	148, 245, 293, 305, 346
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	5 cut(s)	146, 243, 291, 303, 344
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	68, 176
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	2 cut(s)	185, 280
MroNI	GCCGGC	1 cut(s)	207
MseI	TTAA	1 cut(s)	376
MspI	CCGG	2 cut(s)	11, 208
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	88
NaeI	GCCGGC	1 cut(s)	209
NdeII	GATC	5 cut(s)	146, 243, 291, 303, 344
NgoMIV	GCCGGC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	95, 189, 213, 359
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	4 cut(s)	94, 188, 212, 358
Sau3AI	GATC	5 cut(s)	146, 243, 291, 303, 344
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	68, 176
SetI	ASST	5 cut(s)	50, 98, 108, 119, 156
SfaNI	GCATC	1 cut(s)	100
SinI	GGWCC	1 cut(s)	45
SsiI	CCGC	4 cut(s)	14, 72, 187, 357
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	61, 231
TauI	GCSGC	2 cut(s)	190, 360
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TscAI	CASTG	2 cut(s)	73, 344
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	2 cut(s)	93, 211
Tsp45I	GTSAC	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	73, 344
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	45
XagI	CCTNNNNNAGG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.