RNA polymerase II-associated factor 1 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361 |
| rosa_multiflora | Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00036080 |
| rosa_rugosa | Rorug04G0203200 |
| rosa_samantha | Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700 |
| rosa_wichuraiana | Rw5G028010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 246 |
| AclWI | GGATC | 2 cut(s) | 187, 257 |
| AcsI | RAATTY | 1 cut(s) | 189 |
| AcuI | CTGAAG | 1 cut(s) | 227 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 225 |
| AluBI | AGCT | 1 cut(s) | 283 |
| AluI | AGCT | 1 cut(s) | 283 |
| Alw21I | GWGCWC | 1 cut(s) | 274 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| Alw44I | GTGCAC | 1 cut(s) | 270 |
| AlwI | GGATC | 2 cut(s) | 187, 257 |
| Aor13HI | TCCGGA | 1 cut(s) | 246 |
| ApaLI | GTGCAC | 1 cut(s) | 270 |
| ApoI | RAATTY | 1 cut(s) | 189 |
| AxyI | CCTNAGG | 1 cut(s) | 29 |
| BaeGI | GKGCMC | 1 cut(s) | 274 |
| Bbv12I | GWGCWC | 1 cut(s) | 274 |
| BccI | CCATC | 1 cut(s) | 170 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BsaI | GGTCTC | 1 cut(s) | 208 |
| BsaWI | WCCGGW | 1 cut(s) | 246 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 225 |
| Bse1I | ACTGG | 3 cut(s) | 55, 95, 164 |
| Bse21I | CCTNAGG | 1 cut(s) | 29 |
| BseAI | TCCGGA | 1 cut(s) | 246 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 225 |
| BseMII | CTCAG | 1 cut(s) | 20 |
| BseNI | ACTGG | 3 cut(s) | 55, 95, 164 |
| BseRI | GAGGAG | 1 cut(s) | 192 |
| BseSI | GKGCMC | 1 cut(s) | 274 |
| BseYI | CCCAGC | 2 cut(s) | 77, 117 |
| BsgI | GTGCAG | 2 cut(s) | 79, 119 |
| BsiHKAI | GWGCWC | 1 cut(s) | 274 |
| BsiSI | CCGG | 3 cut(s) | 40, 129, 247 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 225 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| Bso31I | GGTCTC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp13I | TCCGGA | 1 cut(s) | 246 |
| Bsp143I | GATC | 3 cut(s) | 179, 262, 307 |
| BspCNI | CTCAG | 1 cut(s) | 21 |
| BspEI | TCCGGA | 1 cut(s) | 246 |
| BspHI | TCATGA | 2 cut(s) | 48, 88 |
| BspPI | GGATC | 2 cut(s) | 187, 257 |
| BspTNI | GGTCTC | 1 cut(s) | 208 |
| BsrI | ACTGG | 3 cut(s) | 55, 95, 164 |
| BssMI | GATC | 3 cut(s) | 179, 262, 307 |
| Bst6I | CTCTTC | 1 cut(s) | 201 |
| BstDEI | CTNAG | 1 cut(s) | 29 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstKTI | GATC | 3 cut(s) | 182, 265, 310 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstMBI | GATC | 3 cut(s) | 179, 262, 307 |
| BstSLI | GKGCMC | 1 cut(s) | 274 |
| BstX2I | RGATCY | 2 cut(s) | 179, 262 |
| BstYI | RGATCY | 2 cut(s) | 179, 262 |
| Bsu36I | CCTNAGG | 1 cut(s) | 29 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsI | GCAGTG | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 3 cut(s) | 62, 102, 157 |
| CciI | TCATGA | 2 cut(s) | 48, 88 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 133, 168 |
| CviAII | CATG | 6 cut(s) | 49, 68, 89, 108, 286, 292 |
| CviJI | RGCY | 5 cut(s) | 43, 54, 94, 132, 283 |
| CviKI_1 | RGCY | 5 cut(s) | 43, 54, 94, 132, 283 |
| DdeI | CTNAG | 1 cut(s) | 29 |
| DpnI | GATC | 3 cut(s) | 181, 264, 309 |
| DpnII | GATC | 3 cut(s) | 179, 262, 307 |
| Eam1104I | CTCTTC | 1 cut(s) | 201 |
| EarI | CTCTTC | 1 cut(s) | 201 |
| Eco31I | GGTCTC | 1 cut(s) | 208 |
| Eco57I | CTGAAG | 1 cut(s) | 227 |
| Eco81I | CCTNAGG | 1 cut(s) | 29 |
| FaeI | CATG | 6 cut(s) | 52, 71, 92, 111, 289, 295 |
| FaiI | YATR | 8 cut(s) | 50, 69, 90, 109, 159, 173, 287, 293 |
| FatI | CATG | 6 cut(s) | 48, 67, 88, 107, 285, 291 |
| FokI | GGATG | 1 cut(s) | 188 |
| GsaI | CCCAGC | 2 cut(s) | 81, 121 |
| HapII | CCGG | 3 cut(s) | 40, 129, 247 |
| Hin1II | CATG | 6 cut(s) | 52, 71, 92, 111, 289, 295 |
| HinfI | GANTC | 4 cut(s) | 24, 64, 104, 243 |
| HpaII | CCGG | 3 cut(s) | 40, 129, 247 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 272 |
| Hpy188I | TCNGA | 1 cut(s) | 207 |
| Hpy188III | TCNNGA | 6 cut(s) | 28, 49, 89, 183, 247, 260 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 272 |
| HpyAV | CCTTC | 2 cut(s) | 202, 216 |
| HpyCH4V | TGCA | 7 cut(s) | 60, 71, 100, 111, 150, 161, 272 |
| HpyF3I | CTNAG | 1 cut(s) | 29 |
| Hsp92II | CATG | 6 cut(s) | 52, 71, 92, 111, 289, 295 |
| Kpn2I | TCCGGA | 1 cut(s) | 246 |
| Kzo9I | GATC | 3 cut(s) | 179, 262, 307 |
| MalI | GATC | 3 cut(s) | 181, 264, 309 |
| MboI | GATC | 3 cut(s) | 179, 262, 307 |
| MboII | GAAGA | 2 cut(s) | 188, 307 |
| MfeI | CAATTG | 1 cut(s) | 145 |
| MflI | RGATCY | 2 cut(s) | 179, 262 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MluCI | AATT | 3 cut(s) | 84, 145, 189 |
| MnlI | CCTC | 5 cut(s) | 24, 204, 210, 213, 219 |
| MroI | TCCGGA | 1 cut(s) | 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 290 |
| MspI | CCGG | 3 cut(s) | 40, 129, 247 |
| MunI | CAATTG | 1 cut(s) | 145 |
| NdeII | GATC | 3 cut(s) | 179, 262, 307 |
| NlaIII | CATG | 6 cut(s) | 52, 71, 92, 111, 289, 295 |
| PagI | TCATGA | 2 cut(s) | 48, 88 |
| PfeI | GAWTC | 4 cut(s) | 24, 64, 104, 243 |
| PspFI | CCCAGC | 2 cut(s) | 77, 117 |
| PsuI | RGATCY | 2 cut(s) | 179, 262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 290 |
| Sau3AI | GATC | 3 cut(s) | 179, 262, 307 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SetI | ASST | 3 cut(s) | 35, 230, 285 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 290 |
| Sse9I | AATT | 3 cut(s) | 84, 145, 189 |
| TasI | AATT | 3 cut(s) | 84, 145, 189 |
| TfiI | GAWTC | 4 cut(s) | 24, 64, 104, 243 |
| TscAI | CASTG | 3 cut(s) | 62, 102, 157 |
| TspDTI | ATGAA | 6 cut(s) | 37, 56, 77, 96, 126, 308 |
| TspRI | CASTG | 3 cut(s) | 62, 102, 157 |
| VneI | GTGCAC | 1 cut(s) | 270 |
| XapI | RAATTY | 1 cut(s) | 189 |