Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Reverse (-)

41833538 .. 41851801

Gene Structure 18264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGAAGGGAGATATCATTTATGAAATCTGTCATCAGCCTTATCAACCTGGTTATACTGCCCCATCACCTCCCCCTTAGTTTTTGTAGATTCCGGAACGAACTTCCAGATCCAAGTGCACAACCCAAGCTCATGTCCATGAAGAACGACAAAGATCAAAACTTTGTCCAAAGATATAATGCTTGTCAGGACGGTATAAAATATGAAGATGTCATAGGGAAATATTGTATAAGTGGTGAAGAACCCATCGAGGAAGATCTTGATAAGGCAAATTCCATTGAGGTCAGATTGGAATTCATCGAGGAAGATCTCGACAAGGTACCCTTTGAAGAGGATCTCAATAAAGTAAAATCCTTCGAGGAGGATTTCAATGAGGTGACCAATTTCTTGACTGCCAAAGGAACGAAATTGCTCCTTGTTCCTCTGGTTGTCTTTGCTGGTGAAGGCTGGTGGCACGCTTGGAACTGCTGCCTAGATCGAGAGGTTTGGGTACTGACCCTTGGTGGCACGTCGGCTACTATTATTACTGACGATGGAGAGGTTGCGGTTAGATTTGCAGCTGGGGGGTACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

191

Amino Acids

21.84

Weight (kDa)

4.72

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	319, 567
AccB1I	GGYRCC	2 cut(s)	319, 567
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	2 cut(s)	104, 342
AcsI	RAATTY	2 cut(s)	271, 293
AfaI	GTAC	3 cut(s)	321, 492, 569
AgsI	TTSAA	2 cut(s)	329, 370
AjiI	CACGTC	1 cut(s)	510
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	130, 560
AluI	AGCT	2 cut(s)	130, 560
Alw21I	GWGCWC	1 cut(s)	121
Alw44I	GTGCAC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	104, 342
Aor13HI	TCCGGA	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	468, 557
ApoI	RAATTY	2 cut(s)	271, 293
Asp718I	GGTACC	2 cut(s)	319, 567
AsuHPI	GGTGA	4 cut(s)	59, 248, 388, 452
BaeGI	GKGCMC	1 cut(s)	121
BanI	GGYRCC	2 cut(s)	319, 567
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	455, 569
BccI	CCATC	3 cut(s)	72, 254, 527
BciT130I	CCWGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	473
BglII	AGATCT	2 cut(s)	256, 307
BisI	GCNGC	2 cut(s)	469, 558
BlsI	GCNGC	2 cut(s)	470, 559
Bme1390I	CCNGG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	510
BmiI	GGNNCC	2 cut(s)	321, 569
BmrFI	CCNGG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	499
BsaWI	WCCGGW	1 cut(s)	93
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	455, 569
BseYI	CCCAGC	1 cut(s)	560
BshNI	GGYRCC	2 cut(s)	319, 567
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	93
Bsp143I	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
BspACI	CCGC	1 cut(s)	545
BspEI	TCCGGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	321, 569
BspPI	GGATC	2 cut(s)	104, 342
BspT107I	GGYRCC	2 cut(s)	319, 567
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	194, 572
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	77
BstEII	GGTNACC	1 cut(s)	376
BstKTI	GATC	6 cut(s)	112, 157, 259, 310, 337, 478
BstMBI	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
BstNI	CCWGG	1 cut(s)	50
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	455, 569
BstX2I	RGATCY	4 cut(s)	109, 256, 307, 334
BstYI	RGATCY	4 cut(s)	109, 256, 307, 334
BtrI	CACGTC	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	456
CsiI	ACCWGGT	1 cut(s)	48
Csp6I	GTAC	3 cut(s)	320, 491, 568
CviAII	CATG	2 cut(s)	133, 139
CviJI	RGCY	5 cut(s)	39, 130, 447, 515, 560
CviKI_1	RGCY	5 cut(s)	39, 130, 447, 515, 560
CviQI	GTAC	3 cut(s)	320, 491, 568
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	6 cut(s)	111, 156, 258, 309, 336, 477
DpnII	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	2 cut(s)	136, 142
FaiI	YATR	9 cut(s)	23, 56, 134, 140, 177, 197, 204, 215, 230
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	2 cut(s)	132, 138
Fnu4HI	GCNGC	2 cut(s)	469, 558
Fsp4HI	GCNGC	2 cut(s)	469, 558
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	2 cut(s)	469, 558
GsaI	CCCAGC	1 cut(s)	564
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	2 cut(s)	136, 142
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	4 cut(s)	59, 248, 388, 452
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	7 cut(s)	94, 107, 188, 260, 311, 388, 479
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	514
HpyAV	CCTTC	2 cut(s)	364, 437
HpyCH4III	ACNGT	2 cut(s)	194, 572
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	2 cut(s)	119, 557
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	136, 142
Kpn2I	TCCGGA	1 cut(s)	93
KpnI	GGTACC	2 cut(s)	323, 571
Kzo9I	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
LmnI	GCTCC	1 cut(s)	417
LpnPI	CCDG	9 cut(s)	35, 62, 107, 120, 173, 410, 423, 433, 546
Lsp1109I	GCAGC	2 cut(s)	455, 569
MabI	ACCWGGT	1 cut(s)	48
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	6 cut(s)	111, 156, 258, 309, 336, 477
MboI	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
MboII	GAAGA	6 cut(s)	154, 218, 251, 266, 317, 341
MflI	RGATCY	4 cut(s)	109, 256, 307, 334
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	4 cut(s)	271, 293, 382, 407
MroI	TCCGGA	1 cut(s)	93
MseI	TTAA	1 cut(s)	574
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
NlaIII	CATG	2 cut(s)	136, 142
NlaIV	GGNNCC	2 cut(s)	321, 569
NmuCI	GTSAC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	470, 559
Psp6I	CCWGG	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	321, 569
PsuI	RGATCY	4 cut(s)	109, 256, 307, 334
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	3 cut(s)	321, 492, 569
RsaNI	GTAC	3 cut(s)	320, 491, 568
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	574
SatI	GCNGC	2 cut(s)	469, 558
Sau3AI	GATC	6 cut(s)	109, 154, 256, 307, 334, 475
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	121
SexAI	ACCWGGT	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	271, 293, 382, 407
SsiI	CCGC	1 cut(s)	545
SspI	AATATT	1 cut(s)	224
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	194, 572
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	5 cut(s)	249, 300, 312, 357, 478
TasI	AATT	4 cut(s)	271, 293, 382, 407
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	574
Tru9I	TTAA	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	468, 557
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	38, 155, 219, 286
VneI	GTGCAC	1 cut(s)	117
XapI	RAATTY	2 cut(s)	271, 293
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.