Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Forward (+)

44219364 .. 44221383

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG267900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGAGATCAGGGGCACTATCTCCTGCGGTGATCGGGTTGATGCCTGAGGTTATTGGGTTGGGCAGATCGGGGCTTCGATCTCCGGGCAGAGGCAATCCCGAAAGGGATCTGTCACTCCTTGAGGTTCGACCTCAGATGTTGGTCGAGATCAATGGGCGGAGGCGTGATTATGCAGGGTTGATGGTGCCGGTTCATTGGCGAAGGAATTGGTGGCAGGGTTGGACGCCTAGAGCTTGTTGGCGGCTGAGTAGGTGGCCGGATTGGGTGACTGCTGAACTAGCATCCTTTGGGGAGATTGGAGGTTGGGCCAAGCCCAGGGATTTGGGCCCTTGCTGGTGGGCTGCTGCTGCTTTCCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

10.95

Isoelectric Point (pI)

72.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AciI	CCGC	3 cut(s)	29, 160, 244
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	92, 318
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	3 cut(s)	257, 309, 328
ApaI	GGGCCC	1 cut(s)	332
ApeKI	GCWGC	3 cut(s)	344, 347, 350
AspS9I	GGNCC	3 cut(s)	309, 328, 329
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	43, 280
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	2 cut(s)	19, 332
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	331, 334, 337
BccI	CCATC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	2 cut(s)	231, 281
BisI	GCNGC	4 cut(s)	245, 345, 348, 351
BlsI	GCNGC	4 cut(s)	246, 346, 349, 352
Bme1390I	CCNGG	2 cut(s)	87, 319
BmgT120I	GGNCC	3 cut(s)	309, 328, 329
BmiI	GGNNCC	2 cut(s)	189, 330
BmrFI	CCNGG	2 cut(s)	87, 319
BmsI	GCATC	2 cut(s)	33, 293
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	317, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 318
Bse118I	RCCGGY	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	317, 318
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	92, 318
BseMII	CTCAG	3 cut(s)	39, 149, 239
BseSI	GKGCMC	2 cut(s)	19, 332
BseXI	GCAGC	3 cut(s)	331, 334, 337
BshFI	GGCC	3 cut(s)	259, 311, 330
BshNI	GGYRCC	1 cut(s)	187
BsiSI	CCGG	3 cut(s)	86, 191, 260
BslI	CCNNNNNNNGG	2 cut(s)	92, 318
BsnI	GGCC	3 cut(s)	259, 311, 330
Bsp120I	GGGCCC	1 cut(s)	328
Bsp1286I	GDGCHC	2 cut(s)	19, 332
Bsp143I	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
BspACI	CCGC	3 cut(s)	29, 160, 244
BspANI	GGCC	3 cut(s)	259, 311, 330
BspCNI	CTCAG	3 cut(s)	40, 148, 240
BspLI	GGNNCC	2 cut(s)	189, 330
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	317, 318
BssMI	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	227
BstDEI	CTNAG	3 cut(s)	48, 135, 248
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	6 cut(s)	11, 36, 71, 83, 112, 153
BstMBI	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 350
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	85, 317
BstSLI	GKGCMC	2 cut(s)	19, 332
BstV1I	GCAGC	3 cut(s)	331, 334, 337
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	109
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	259, 311, 330
BtsCI	GGATG	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	309, 328, 329
CseI	GACGC	1 cut(s)	235
CviJI	RGCY	8 cut(s)	76, 236, 247, 259, 311, 316, 330, 344
CviKI_1	RGCY	8 cut(s)	76, 236, 247, 259, 311, 316, 330, 344
DdeI	CTNAG	3 cut(s)	48, 135, 248
DpnI	GATC	6 cut(s)	10, 35, 70, 82, 111, 152
DpnII	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
EaeI	YGGCCR	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	332
FaiI	YATR	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	245, 345, 348, 351
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	4 cut(s)	245, 345, 348, 351
FspBI	CTAG	2 cut(s)	231, 281
GluI	GCNGC	4 cut(s)	245, 345, 348, 351
HaeIII	GGCC	3 cut(s)	259, 311, 330
HapII	CCGG	3 cut(s)	86, 191, 260
HgaI	GACGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	227
HpaII	CCGG	3 cut(s)	86, 191, 260
HphI	GGTGA	2 cut(s)	43, 280
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	101, 148
HpyAV	CCTTC	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 350
HpyF3I	CTNAG	3 cut(s)	48, 135, 248
Hsp92I	GRCGYC	1 cut(s)	227
Kzo9I	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
Lsp1109I	GCAGC	3 cut(s)	331, 334, 337
LweI	GCATC	2 cut(s)	33, 293
MaeI	CTAG	2 cut(s)	231, 281
MaeIII	GTNAC	2 cut(s)	114, 268
MalI	GATC	6 cut(s)	10, 35, 70, 82, 111, 152
MboI	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	19, 332
MluCI	AATT	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	43, 86, 118, 144, 156, 296
MspI	CCGG	3 cut(s)	86, 191, 260
MspR9I	CCNGG	2 cut(s)	87, 319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	281, 350
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
NlaIV	GGNNCC	2 cut(s)	189, 330
NmuCI	GTSAC	2 cut(s)	114, 268
PasI	CCCWGGG	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	246, 346, 349, 352
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	189, 330
PspOMI	GGGCCC	1 cut(s)	328
PspPI	GGNCC	3 cut(s)	309, 328, 329
PsuI	RGATCY	1 cut(s)	109
SatI	GCNGC	4 cut(s)	245, 345, 348, 351
Sau3AI	GATC	6 cut(s)	8, 33, 68, 80, 109, 150
Sau96I	GGNCC	3 cut(s)	309, 328, 329
ScrFI	CCNGG	2 cut(s)	87, 319
SduI	GDGCHC	2 cut(s)	19, 332
SetI	ASST	6 cut(s)	54, 129, 136, 238, 257, 307
SfaNI	GCATC	2 cut(s)	33, 293
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	29, 160, 244
SspMI	CTAG	2 cut(s)	231, 281
StyD4I	CCNGG	2 cut(s)	85, 317
TaqI	TCGA	3 cut(s)	79, 130, 147
TasI	AATT	1 cut(s)	208
TauI	GCSGC	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	114, 268
TseI	GCWGC	3 cut(s)	344, 347, 350
Tsp45I	GTSAC	2 cut(s)	114, 268
TspDTI	ATGAA	1 cut(s)	185
XspI	CTAG	2 cut(s)	231, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.