Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8115642.1

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 413

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8115642.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 233 bp

atgagtatggcgaggccggtgcctgagaatccttctgagcagggaattgcaaaagcttcgacaagcatgtgtattccactggaggctcagtgtcctgtcagaaagtggtattttacgaaacaggaaattgaagactctccatcccggagggatggcattagcacgaagaaagagtcgcacttgcggagtttatactgctcgtttcttcaggagattgggatgaagcttaaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

78

Amino Acids

8.88

Weight (kDa)

8.91

Isoelectric Point (pI)

88.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	2 cut(s)	56, 226
AluI	AGCT	2 cut(s)	56, 226
AoxI	GGCC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AsuC2I	CCSGG	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	2 cut(s)	146, 148
BcgI	CGANNNNNNTGC	3 cut(s)	35, 39, 73
BcnI	CCSGG	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	140, 157, 225
BseMII	CTCAG	3 cut(s)	15, 27, 101
BseNI	ACTGG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	17, 145
BsnI	GGCC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	3 cut(s)	16, 28, 100
BspLI	GGNNCC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	24, 36, 87
BstF5I	GGATG	3 cut(s)	140, 157, 225
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	143
BstV2I	GAAGAC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	140, 157, 225
BtsIMutI	CAGTG	2 cut(s)	77, 95
Cfr10I	RCCGGY	1 cut(s)	16
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	4 cut(s)	16, 56, 86, 226
CviKI_1	RGCY	4 cut(s)	16, 56, 86, 226
DdeI	CTNAG	3 cut(s)	24, 36, 87
Eco57I	CTGAAG	1 cut(s)	191
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	8, 68, 193
FatI	CATG	1 cut(s)	66
FokI	GGATG	2 cut(s)	127, 164
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	2 cut(s)	17, 145
Hin1II	CATG	1 cut(s)	70
HindIII	AAGCTT	2 cut(s)	54, 224
HinfI	GANTC	3 cut(s)	28, 134, 173
HpaII	CCGG	2 cut(s)	17, 145
Hpy188I	TCNGA	2 cut(s)	37, 101
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	24, 36, 87
Hsp92II	CATG	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	26, 30, 36, 65, 107, 108, 158, 194
MboII	GAAGA	3 cut(s)	143, 178, 197
MluCI	AATT	2 cut(s)	45, 126
MlyI	GAGTC	2 cut(s)	128, 182
MnlI	CCTC	3 cut(s)	6, 76, 141
MseI	TTAA	1 cut(s)	228
MspI	CCGG	2 cut(s)	17, 145
MspR9I	CCNGG	1 cut(s)	145
NciI	CCSGG	1 cut(s)	145
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	143
PleI	GAGTC	2 cut(s)	128, 181
PpsI	GAGTC	2 cut(s)	128, 181
PspN4I	GGNNCC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	228
SchI	GAGTC	2 cut(s)	128, 182
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	2 cut(s)	58, 228
Sse9I	AATT	2 cut(s)	45, 126
SsiI	CCGC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	143
TaqI	TCGA	1 cut(s)	59
TasI	AATT	2 cut(s)	45, 126
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	84, 95
TspRI	CASTG	2 cut(s)	84, 95
XceI	RCATGY	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.