Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Forward (+)

28265975 .. 28267338

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG284500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTTGGCCAAGATCATTGGGCGGCGGCGTGATTATGCAGGGTTGATGGTGCCGGTTCGTTGGCGGAGGAATTGGTGGCGGGGTTGGACGCCTGGAGCTCGTTGGAGGCGGAGTTGGTGGCCGGATTGGGTGACTGCAGCCCTGGAATCCTGTGGGGAGATTGGAGGTTGGGCCAGGCCCAGGGATTTAGGCCCTTGCTGGTGGGCTGCTGCTCGGAGGAACTGGAAGATCAAGCAACCAACTGTCCTTTATGGATCCATAAGTCATAACGTTTATATTCAAACATGGAGTTTCCCATTTCAATTGTTGGATCAATTCACTACAGGATCTAGAGAATCAAACAAGTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.95

Weight (kDa)

11.27

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	5 cut(s)	22, 25, 64, 79, 109
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	4 cut(s)	249, 262, 318, 334
AcoI	YGGCCR	2 cut(s)	6, 119
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	281, 302
AjnI	CCWGG	4 cut(s)	91, 141, 173, 179
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	4 cut(s)	249, 262, 318, 334
AoxI	GGCC	5 cut(s)	6, 119, 171, 176, 190
ApeKI	GCWGC	3 cut(s)	137, 206, 209
AspS9I	GGNCC	3 cut(s)	171, 177, 191
AsuHPI	GGTGA	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	3 cut(s)	149, 193, 196
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	4 cut(s)	93, 143, 175, 181
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	2 cut(s)	135, 321
BisI	GCNGC	5 cut(s)	23, 26, 138, 207, 210
BlsI	GCNGC	5 cut(s)	24, 27, 139, 208, 211
Bme1390I	CCNGG	4 cut(s)	93, 143, 175, 181
BmgT120I	GGNCC	3 cut(s)	171, 177, 191
BmiI	GGNNCC	2 cut(s)	51, 256
BmrFI	CCNGG	4 cut(s)	93, 143, 175, 181
BpmI	CTGGAG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	141, 179, 180
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	4 cut(s)	93, 143, 175, 181
BseDI	CCNNGG	3 cut(s)	141, 179, 180
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	3 cut(s)	149, 193, 196
BshFI	GGCC	5 cut(s)	8, 121, 173, 178, 192
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	53, 122
BslI	CCNNNNNNNGG	1 cut(s)	180
BsnI	GGCC	5 cut(s)	8, 121, 173, 178, 192
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	12, 228, 254, 310, 326
BspACI	CCGC	5 cut(s)	22, 25, 64, 79, 109
BspANI	GGCC	5 cut(s)	8, 121, 173, 178, 192
BspLI	GGNNCC	2 cut(s)	51, 256
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	4 cut(s)	249, 262, 318, 334
BspT107I	GGYRCC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	3 cut(s)	141, 179, 180
BssMI	GATC	5 cut(s)	12, 228, 254, 310, 326
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	4 cut(s)	93, 143, 175, 181
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	89
BstKTI	GATC	5 cut(s)	15, 231, 257, 313, 329
BstMBI	GATC	5 cut(s)	12, 228, 254, 310, 326
BstNI	CCWGG	4 cut(s)	93, 143, 175, 181
BstSCI	CCNGG	4 cut(s)	91, 141, 173, 179
BstSFI	CTRYAG	2 cut(s)	135, 321
BstV1I	GCAGC	3 cut(s)	149, 193, 196
BstX2I	RGATCY	2 cut(s)	254, 326
BstYI	RGATCY	2 cut(s)	254, 326
BsuRI	GGCC	5 cut(s)	8, 121, 173, 178, 192
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	171, 177, 191
CseI	GACGC	1 cut(s)	97
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	8 cut(s)	8, 98, 121, 140, 173, 178, 192, 206
CviKI_1	RGCY	8 cut(s)	8, 98, 121, 140, 173, 178, 192, 206
DpnI	GATC	5 cut(s)	14, 230, 256, 312, 328
DpnII	GATC	5 cut(s)	12, 228, 254, 310, 326
EaeI	YGGCCR	2 cut(s)	6, 119
EciI	GGCGGA	2 cut(s)	79, 124
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	4 cut(s)	91, 141, 173, 179
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	1 cut(s)	288
FaiI	YATR	6 cut(s)	36, 252, 260, 267, 276, 286
FatI	CATG	1 cut(s)	284
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	23, 26, 138, 207, 210
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	5 cut(s)	23, 26, 138, 207, 210
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	5 cut(s)	23, 26, 138, 207, 210
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	5 cut(s)	8, 121, 173, 178, 192
HapII	CCGG	2 cut(s)	53, 122
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	288
HinfI	GANTC	2 cut(s)	146, 335
HpaII	CCGG	2 cut(s)	53, 122
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	330
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	38, 137
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	12, 228, 254, 310, 326
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	3 cut(s)	149, 193, 196
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	5 cut(s)	14, 230, 256, 312, 328
MboI	GATC	5 cut(s)	12, 228, 254, 310, 326
MboII	GAAGA	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	2 cut(s)	254, 326
MhlI	GDGCHC	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	3 cut(s)	70, 302, 314
MluNI	TGGCCA	1 cut(s)	8
MmeI	TCCRAC	3 cut(s)	65, 83, 288
MnlI	CCTC	4 cut(s)	60, 99, 158, 210
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	2 cut(s)	53, 122
MspR9I	CCNGG	4 cut(s)	93, 143, 175, 181
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	4 cut(s)	93, 143, 175, 181
NdeII	GATC	5 cut(s)	12, 228, 254, 310, 326
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	2 cut(s)	51, 256
NmuCI	GTSAC	1 cut(s)	130
PasI	CCCWGGG	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	146, 335
PkrI	GCNGC	5 cut(s)	24, 27, 139, 208, 211
Psp124BI	GAGCTC	1 cut(s)	100
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	4 cut(s)	91, 141, 173, 179
PspGI	CCWGG	4 cut(s)	91, 141, 173, 179
PspN4I	GGNNCC	2 cut(s)	51, 256
PspPI	GGNCC	3 cut(s)	171, 177, 191
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	254, 326
SacI	GAGCTC	1 cut(s)	100
SatI	GCNGC	5 cut(s)	23, 26, 138, 207, 210
Sau3AI	GATC	5 cut(s)	12, 228, 254, 310, 326
Sau96I	GGNCC	3 cut(s)	171, 177, 191
ScrFI	CCNGG	4 cut(s)	93, 143, 175, 181
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	3 cut(s)	100, 169, 273
SfcI	CTRYAG	2 cut(s)	135, 321
Sse9I	AATT	3 cut(s)	70, 302, 314
SsiI	CCGC	5 cut(s)	22, 25, 64, 79, 109
SspMI	CTAG	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	4 cut(s)	91, 141, 173, 179
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	273
TasI	AATT	3 cut(s)	70, 302, 314
TauI	GCSGC	2 cut(s)	25, 28
TfiI	GAWTC	2 cut(s)	146, 335
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	3 cut(s)	137, 206, 209
Tsp45I	GTSAC	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	329
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.