Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037601.1

Orthogroup ID

OG0008177

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2565

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 680 bp

atgttccgtctggtggcgcgtccatatggcgctgtcgtcggacgggcctatgaggttacgacgtgcactggcagggttttgaggcttaggcgcggctcgggaaaggtggatgcaaggtgtattttgggttgggcagatctactccgatctgaccttctttggtcatgggtgagcacaaggatagagcggcgaggatgggttgttggtcggtggcgagagctggggtcacagtctcctttattgatcggatttctgcctgagttgattgggttgggtggatcggggcttcgatctcctggcagaggcaatcccgaaagagatctgtcgtggcttgaggtccgacctccgatggcagtggagatcgttggtgggcggcgtgggaataccggattgatgacactggtctctaatcattcaatcagctgcgaaattcgaataactgatttgatgagtatggcgaggccggtgcctgagaatccttctgagcagggaattgcaaaagcttcgacaagcatgtgtattccactggaggctcagtgtcctgtcagaaagtggtattttacgaaacaggaaattgaagactctccatcccggagggatggcattagcacgaagaaagagtcgcacttgcggagtttatactgctcgtttcttcaggagattgggatgaagcttaaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

227

Amino Acids

25.4

Weight (kDa)

9.92

Isoelectric Point (pI)

67.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008177)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150721 RchiOBHm_Chr6g0266431 RchiOBHm_Chr6g0298361
rosa_multiflora	Rmu_co8115642.1_g000001 Rmu_sc0037601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036080
rosa_rugosa	Rorug04G0203200
rosa_samantha	Rh1BG425600 Rh1DG458400 Rh3BG284500 Rh3DG278300 Rh4BG029200 Rh4DG103500 Rh5AG159800 Rh5CG173500 Rh5CG185900 Rh5CG335500 Rh5CG335800 Rh5CG336300 Rh5CG336600 Rh5DG159300 Rh6CG267900 Rh7BG181700
rosa_wichuraiana	Rw5G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	187
AccII	CGCG	2 cut(s)	19, 93
AciI	CCGC	4 cut(s)	93, 187, 373, 631
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	638
AfiI	CCNNNNNNNGG	2 cut(s)	13, 302
AgsI	TTSAA	2 cut(s)	417, 578
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	4 cut(s)	220, 423, 503, 673
AluI	AGCT	4 cut(s)	220, 423, 503, 673
Alw21I	GWGCWC	2 cut(s)	68, 176
Alw26I	GTCTC	2 cut(s)	237, 409
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	45, 461
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AspLEI	GCGC	3 cut(s)	19, 32, 93
AspS9I	GGNCC	2 cut(s)	45, 337
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	2 cut(s)	68, 176
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	4 cut(s)	189, 343, 593, 595
BcgI	CGANNNNNNTGC	4 cut(s)	448, 482, 486, 520
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	237, 409
BfoI	RGCGCY	1 cut(s)	33
BglII	AGATCT	2 cut(s)	136, 319
BisI	GCNGC	4 cut(s)	94, 188, 374, 424
BlsI	GCNGC	4 cut(s)	95, 189, 375, 425
Bme1390I	CCNGG	2 cut(s)	297, 592
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	45, 337
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	297, 592
BmsI	GCATC	1 cut(s)	100
BoxI	GACNNNNGTC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	548
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	592
BsaI	GGTCTC	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 302
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	73, 405, 531
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	5 cut(s)	115, 200, 587, 604, 672
BseLI	CCNNNNNNNGG	2 cut(s)	13, 302
BseMII	CTCAG	4 cut(s)	249, 462, 474, 548
BseNI	ACTGG	3 cut(s)	73, 405, 531
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	410
BseYI	CCCAGC	1 cut(s)	220
Bsh1236I	CGCG	2 cut(s)	19, 93
BshFI	GGCC	2 cut(s)	47, 463
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	2 cut(s)	68, 176
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	387, 464, 592
BslI	CCNNNNNNNGG	2 cut(s)	13, 302
BsmAI	GTCTC	2 cut(s)	237, 409
BsnI	GGCC	2 cut(s)	47, 463
Bso31I	GGTCTC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	68, 176
Bsp143I	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
BspACI	CCGC	4 cut(s)	93, 187, 373, 631
BspANI	GGCC	2 cut(s)	47, 463
BspCNI	CTCAG	4 cut(s)	250, 463, 475, 547
BspFNI	CGCG	2 cut(s)	19, 93
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	286
BspT104I	TTCGAA	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	73, 405, 531
BssAI	RCCGGY	1 cut(s)	463
BssMI	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	433
BstDEI	CTNAG	5 cut(s)	86, 258, 471, 483, 534
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	5 cut(s)	115, 200, 587, 604, 672
BstFNI	CGCG	2 cut(s)	19, 93
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	3 cut(s)	19, 32, 93
BstKTI	GATC	7 cut(s)	139, 149, 246, 281, 293, 322, 363
BstMAI	GTCTC	2 cut(s)	237, 409
BstMBI	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	517
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	295, 590
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	2 cut(s)	19, 93
BstV1I	GCAGC	1 cut(s)	410
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	2 cut(s)	136, 319
BstYI	RGATCY	2 cut(s)	136, 319
BsuRI	GGCC	2 cut(s)	47, 463
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	5 cut(s)	115, 200, 587, 604, 672
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	5 cut(s)	66, 360, 398, 524, 542
CfoI	GCGC	3 cut(s)	19, 32, 93
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	45, 337
CseI	GACGC	1 cut(s)	8
CviAII	CATG	2 cut(s)	165, 514
DdeI	CTNAG	5 cut(s)	86, 258, 471, 483, 534
DpnI	GATC	7 cut(s)	138, 148, 245, 280, 292, 321, 362
DpnII	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	168, 517
FaiI	YATR	7 cut(s)	25, 27, 51, 166, 455, 515, 640
FatI	CATG	2 cut(s)	164, 513
FauNDI	CATATG	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	94, 188, 374, 424
FokI	GGATG	4 cut(s)	122, 207, 574, 611
Fsp4HI	GCNGC	4 cut(s)	94, 188, 374, 424
GlaI	GCGC	3 cut(s)	18, 31, 92
GluI	GCNGC	4 cut(s)	94, 188, 374, 424
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	47, 463
HapII	CCGG	3 cut(s)	387, 464, 592
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	3 cut(s)	19, 32, 93
Hin1II	CATG	2 cut(s)	168, 517
Hin6I	GCGC	3 cut(s)	17, 30, 91
HinP1I	GCGC	3 cut(s)	17, 30, 91
HindIII	AAGCTT	2 cut(s)	501, 671
HinfI	GANTC	3 cut(s)	475, 581, 620
HpaII	CCGG	3 cut(s)	387, 464, 592
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	8 cut(s)	41, 146, 151, 248, 341, 348, 484, 548
Hpy188III	TCNNGA	3 cut(s)	99, 311, 656
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	2 cut(s)	41, 64
HpyAV	CCTTC	2 cut(s)	164, 489
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	66, 113, 497
HpyF3I	CTNAG	5 cut(s)	86, 258, 471, 483, 534
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	168, 517
HspAI	GCGC	3 cut(s)	17, 30, 91
Kzo9I	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	55, 225
MalI	GATC	7 cut(s)	138, 148, 245, 280, 292, 321, 362
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
MboII	GAAGA	3 cut(s)	590, 625, 644
MflI	RGATCY	2 cut(s)	136, 319
MhlI	GDGCHC	2 cut(s)	68, 176
MluCI	AATT	3 cut(s)	429, 492, 573
MlyI	GAGTC	2 cut(s)	575, 629
MmeI	TCCRAC	2 cut(s)	19, 364
MnlI	CCTC	9 cut(s)	46, 75, 185, 296, 328, 354, 453, 523, 588
MseI	TTAA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	3 cut(s)	387, 464, 592
MspR9I	CCNGG	2 cut(s)	297, 592
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	2 cut(s)	19, 93
NciI	CCSGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
NlaIII	CATG	2 cut(s)	168, 517
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	517
NspV	TTCGAA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	95, 189, 375, 425
PleI	GAGTC	2 cut(s)	575, 628
PpsI	GAGTC	2 cut(s)	575, 628
PshAI	GACNNNNGTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	2 cut(s)	45, 337
PsuI	RGATCY	2 cut(s)	136, 319
PvuII	CAGCTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	4 cut(s)	94, 188, 374, 424
Sau3AI	GATC	7 cut(s)	136, 146, 243, 278, 290, 319, 360
Sau96I	GGNCC	2 cut(s)	45, 337
SchI	GAGTC	2 cut(s)	575, 629
ScrFI	CCNGG	2 cut(s)	297, 592
SduI	GDGCHC	2 cut(s)	68, 176
SfaNI	GCATC	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	429, 492, 573
SsiI	CCGC	4 cut(s)	93, 187, 373, 631
StyD4I	CCNGG	2 cut(s)	295, 590
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	289, 433, 506
TasI	AATT	3 cut(s)	429, 492, 573
TauI	GCSGC	3 cut(s)	96, 190, 376
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	5 cut(s)	73, 360, 405, 531, 542
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	225
TspRI	CASTG	5 cut(s)	73, 360, 405, 531, 542
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	429
XceI	RCATGY	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.