RchiOBHm_Chr2g0174501

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
87067797 .. 87069848
2052 bp
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UTR
Exon/CDS
Intron
PRQ54165

Sequence Viewer

Length: 225 bp
ATGATTTGCATGTTCTCCTTTGGCTACGATTGCCCTGCATCTAAGGACTCTAGGCAACAGCAGCTCCGCAAGTTCGTGTCGTTGTTATGGGCAACATCAAAGACGGAGACTTTGCTTTCAGCTGGCTCATCAAGTCATTTTATGGGGGAAGACCTCCAATCCCTTAAGTATGAAAGAGCTTCAGATTTGGAGCAGCAACTTAACTCTGAAGCACATAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.41

Weight (kDa)

6.04

Isoelectric Point (pI)

63.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 165
AflII CTTAAG 1 cut(s) 164
AluBI AGCT 3 cut(s) 64, 122, 179
AluI AGCT 3 cut(s) 64, 122, 179
Alw26I GTCTC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 61, 193
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 73, 205
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 51, 223
BfrI CTTAAG 1 cut(s) 164
BglII AGATCT 1 cut(s) 219
BisI GCNGC 2 cut(s) 62, 194
BlsI GCNGC 2 cut(s) 63, 195
BmsI GCATC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
BseXI GCAGC 2 cut(s) 73, 205
BsmAI GTCTC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 164
BssMI GATC 1 cut(s) 219
BstAFI CTTAAG 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 42
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 2 cut(s) 30, 61
BstNSI RCATGY 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 73, 205
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 124
CviAII CATG 1 cut(s) 10
CviJI RGCY 5 cut(s) 24, 64, 122, 126, 179
CviKI_1 RGCY 5 cut(s) 24, 64, 122, 126, 179
DdeI CTNAG 1 cut(s) 42
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 165
FaeI CATG 1 cut(s) 13
FaiI YATR 5 cut(s) 11, 88, 143, 171, 216
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 62, 194
Fsp4HI GCNGC 2 cut(s) 62, 194
FspBI CTAG 2 cut(s) 51, 223
GluI GCNGC 2 cut(s) 62, 194
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 184, 208
HpyCH4V TGCA 2 cut(s) 9, 38
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 61
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 69, 190
LpnPI CCDG 2 cut(s) 48, 108
Lsp1109I GCAGC 2 cut(s) 73, 205
LweI GCATC 1 cut(s) 47
MaeI CTAG 2 cut(s) 51, 223
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 219
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 1 cut(s) 164
MseI TTAA 2 cut(s) 165, 201
MspA1I CMGCKG 1 cut(s) 122
MspCI CTTAAG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 30, 61
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 13
NspI RCATGY 1 cut(s) 13
PkrI GCNGC 2 cut(s) 63, 195
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PsuI RGATCY 1 cut(s) 219
PvuII CAGCTG 1 cut(s) 122
SaqAI TTAA 2 cut(s) 165, 201
SatI GCNGC 2 cut(s) 62, 194
Sau3AI GATC 1 cut(s) 219
SchI GAGTC 1 cut(s) 41
SetI ASST 4 cut(s) 66, 124, 156, 181
SfaNI GCATC 1 cut(s) 47
SgeI CNNG 7 cut(s) 22, 47, 63, 82, 88, 135, 144
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SsiI CCGC 1 cut(s) 67
SspMI CTAG 2 cut(s) 51, 223
Tru1I TTAA 2 cut(s) 165, 201
Tru9I TTAA 2 cut(s) 165, 201
TseI GCWGC 2 cut(s) 61, 193
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 164
XceI RCATGY 1 cut(s) 13
XspI CTAG 2 cut(s) 51, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.