Rh2BG669400

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009731
Physical Location & Seq
Forward (+)
88148548 .. 88155975
7428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG669400.1

Sequence Viewer

Length: 513 bp
ATGAAAGAGCTTCAGATTTGGAGCAGCAACTTAACTCTGAAGCACATAAGATCTAGAAAGGGTGAGAGCATTCTATCATGGATTGGAGATGATTATGTTGTTATAGATTATAAGACTGCTGCACATCTTGAGAATCATTTGATCAATTTGGATGAAAAGAAGTTTGGTATCAACCCCTACCAAAAATCGAAAGAGACGATAGAGATGAGAGTGCATATGGACTGCCCTGGATGCGAGAGCAAGGTTAGAAGTACACTTCAGAAGCTAAAAGGTTGCATCTCCGGTGTTGACGTGGAGAAGTTTGATGACAAGTACTTTGCCAAGGAGGGTCAAAAGAAGAAAAACGAGGGAGAAGGCGAGTTCTTTGAAGCGGAGAGGGAGGTGCTTCGATTCTTATTTCCGACGAGGGATGACTTGCCACTCAAGGATTCCACCTCACAAGCAAAGACATGTTTTATAAAGCCCTACTCCAAGTTCAAGATACCTTCAAACTTTAAGAATCGAGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

170

Amino Acids

19.76

Weight (kDa)

8.77

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 111, 458
AciI CCGC 1 cut(s) 371
AcuI CTGAAG 2 cut(s) 59, 242
AfaI GTAC 2 cut(s) 253, 314
AflIII ACRYGT 1 cut(s) 449
AgsI TTSAA 3 cut(s) 368, 478, 489
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 2 cut(s) 10, 265
AluI AGCT 2 cut(s) 10, 265
Alw26I GTCTC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 24, 119
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AsuHPI GGTGA 1 cut(s) 74
BbvI GCAGC 2 cut(s) 36, 106
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 54
BglII AGATCT 1 cut(s) 50
BisI GCNGC 2 cut(s) 25, 120
BlsI GCNGC 2 cut(s) 26, 121
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 3 cut(s) 221, 285, 496
BpuEI CTTGAG 2 cut(s) 149, 407
BsaJI CCNNGG 2 cut(s) 226, 321
BsaWI WCCGGW 1 cut(s) 281
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 226, 321
BseGI GGATG 3 cut(s) 157, 236, 415
BseXI GCAGC 2 cut(s) 36, 106
BsgI GTGCAG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 50, 141
BspACI CCGC 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 226, 321
BssMI GATC 2 cut(s) 50, 141
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 228
BstF5I GGATG 3 cut(s) 157, 236, 415
BstKTI GATC 2 cut(s) 53, 144
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 50, 141
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 36, 106
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 3 cut(s) 157, 236, 415
Csp6I GTAC 2 cut(s) 252, 313
CviAII CATG 2 cut(s) 78, 450
CviJI RGCY 3 cut(s) 10, 265, 463
CviKI_1 RGCY 3 cut(s) 10, 265, 463
CviQI GTAC 2 cut(s) 252, 313
DpnI GATC 2 cut(s) 52, 143
DpnII GATC 2 cut(s) 50, 141
Eco130I CCWWGG 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 59, 242
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 81, 453
FaiI YATR 9 cut(s) 47, 79, 96, 104, 111, 216, 218, 451, 458
FatI CATG 2 cut(s) 77, 449
FauNDI CATATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 25, 120
FokI GGATG 3 cut(s) 164, 243, 422
Fsp4HI GCNGC 2 cut(s) 25, 120
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 25, 120
HapII CCGG 1 cut(s) 282
Hin1II CATG 2 cut(s) 81, 453
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 4 cut(s) 133, 390, 428, 499
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 254, 289
Hpy188I TCNGA 4 cut(s) 15, 39, 261, 402
Hpy188III TCNNGA 4 cut(s) 54, 128, 478, 503
Hpy8I GTNNAC 2 cut(s) 254, 289
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 347, 495
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 122, 214, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 81, 453
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 50, 141
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 213, 240, 295
Lsp1109I GCAGC 2 cut(s) 36, 106
LweI GCATC 3 cut(s) 221, 285, 496
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 291
MalI GATC 2 cut(s) 52, 143
MboI GATC 2 cut(s) 50, 141
MboII GAAGA 1 cut(s) 349
MflI RGATCY 1 cut(s) 50
MluCI AATT 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 6 cut(s) 319, 340, 369, 373, 399, 445
MseI TTAA 3 cut(s) 32, 495, 511
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeI CATATG 1 cut(s) 216
NdeII GATC 2 cut(s) 50, 141
NlaIII CATG 2 cut(s) 81, 453
NspI RCATGY 1 cut(s) 453
PciI ACATGT 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PctI GAATGC 1 cut(s) 69
PfeI GAWTC 4 cut(s) 133, 390, 428, 499
PkrI GCNGC 2 cut(s) 26, 121
PscI ACATGT 1 cut(s) 449
PsiI TTATAA 2 cut(s) 111, 458
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 2 cut(s) 253, 314
RsaNI GTAC 2 cut(s) 252, 313
SaqAI TTAA 3 cut(s) 32, 495, 511
SatI GCNGC 2 cut(s) 25, 120
Sau3AI GATC 2 cut(s) 50, 141
ScaI AGTACT 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 228
SetI ASST 8 cut(s) 12, 246, 267, 274, 294, 384, 437, 487
SfaNI GCATC 3 cut(s) 221, 285, 496
SmlI CTYRAG 2 cut(s) 128, 422
SmoI CTYRAG 2 cut(s) 128, 422
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 188, 388, 502
TasI AATT 1 cut(s) 145
TatI WGTACW 2 cut(s) 251, 312
TfiI GAWTC 4 cut(s) 133, 390, 428, 499
Tru1I TTAA 3 cut(s) 32, 495, 511
Tru9I TTAA 3 cut(s) 32, 495, 511
TseI GCWGC 2 cut(s) 24, 119
TspDTI ATGAA 2 cut(s) 17, 168
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 453
XspI CTAG 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.