Rh4AG102200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009731
Physical Location & Seq
Reverse (-)
21846741 .. 21848640
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG102200.1

Sequence Viewer

Length: 291 bp
ATGGTGGATTGCGGCTGGATACCTGCATCTAAGGATTCTAGGCAACAGCAGCTCCGCAGGTTCGTGTTGTTACGGGCGCCAACATCAAAGACGGAGACTTTGGTTTCAGCTGGAAAGCAACCATTCTCATCAAGTCATTTTATGGGGGAAGACCTCCAATCCCTTAACCAGGGTGAGAGCATTCTATCATGGATTGGAGATGATTATGTTGTTATAGATTATAAGACTGCTGCACATCTTGAGAATCATTTGATCAATTTGGATGAAAAGAAGTTTGGTATCAACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.82

Weight (kDa)

5.83

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
Acc36I ACCTGC 2 cut(s) 31, 48
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 2 cut(s) 12, 55
AcyI GRCGYC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 169
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 2 cut(s) 52, 110
AluI AGCT 2 cut(s) 52, 110
Alw26I GTCTC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 49, 230
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspLEI GCGC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 61, 217
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 12
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 80
BfuAI ACCTGC 2 cut(s) 31, 48
BfuI GTATCC 1 cut(s) 12
BisI GCNGC 3 cut(s) 13, 50, 231
BlsI GCNGC 3 cut(s) 14, 51, 232
Bme1390I CCNGG 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 61, 217
BsgI GTGCAG 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 2 cut(s) 12, 55
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 2 cut(s) 31, 48
BspT107I GGYRCC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 61, 217
BstV2I GAAGAC 1 cut(s) 156
BsuI GTATCC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 268
BveI ACCTGC 2 cut(s) 31, 48
CfoI GCGC 1 cut(s) 79
CviAII CATG 1 cut(s) 189
CviJI RGCY 3 cut(s) 15, 52, 110
CviKI_1 RGCY 3 cut(s) 15, 52, 110
DdeI CTNAG 1 cut(s) 30
DinI GGCGCC 1 cut(s) 78
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 168
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
FaeI CATG 1 cut(s) 192
FaiI YATR 5 cut(s) 143, 190, 207, 215, 222
FatI CATG 1 cut(s) 188
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 13, 50, 231
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 13, 50, 231
FspBI CTAG 1 cut(s) 39
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 13, 50, 231
HaeII RGCGCY 1 cut(s) 80
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 2 cut(s) 35, 244
HphI GGTGA 1 cut(s) 185
Hpy188III TCNNGA 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 26, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 1 cut(s) 77
KasI GGCGCC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 5 cut(s) 36, 43, 96, 155, 182
Lsp1109I GCAGC 2 cut(s) 61, 217
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 161
MluCI AATT 1 cut(s) 256
Mly113I GGCGCC 1 cut(s) 77
MnlI CCTC 1 cut(s) 164
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 49
NarI GGCGCC 1 cut(s) 77
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 78
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 35, 244
PkrI GCNGC 3 cut(s) 14, 51, 232
PluTI GGCGCC 1 cut(s) 80
PsiI TTATAA 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 3 cut(s) 13, 50, 231
Sau3AI GATC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 170
SetI ASST 5 cut(s) 25, 54, 62, 112, 156
SfaNI GCATC 1 cut(s) 35
SfoI GGCGCC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 12, 55
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 168
TasI AATT 1 cut(s) 256
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 35, 244
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 2 cut(s) 49, 230
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 167
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.