Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009731

Physical Location & Seq

Genomic Coordinates Reverse (-)

44582490 .. 44587064

Gene Structure 4575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG337100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTGCAGCAGTTATATATGCTGGAAATCATGTGCTTCACAATTATCTGTGATTCCAGGTCTTGGTTGCATTGATAACTTCTCACGCTACAAGCTGCTAGCAAAAGTGCTGAGTTCTTGGACAATTGAGGAAGTTGAGGAGGGAAACTTCATATATAAGCTTCAAACGTTCTTCAAATACTCCATGGCTGGAGGGACGGAATTTCCACTCTGCAAAGCTAAGGTGATGACCTTTCAGATCAGTATACAAATGAGCTTCGGGGCTGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

10.1

Weight (kDa)

8.3

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009731)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349621 RchiOBHm_Chr2g0097751 RchiOBHm_Chr2g0174501 RchiOBHm_Chr5g0079771 RchiOBHm_Chr6g0277391
rosa_laevigata	RLG00000028020
rosa_roxburghii	Rroxscaffold_2G00118550
rosa_rugosa	Rorug04G0139100
rosa_samantha	Rh2BG337100 Rh2BG669400 Rh3AG337900 Rh3BG074300 Rh3CG073800 Rh3CG372100 Rh3DG372700 Rh4AG102200 Rh4BG325700 Rh4CG340700 Rh5BG287600 Rh5DG383600 Rh7BG440800 Rh7CG197700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	244
AclI	AACGTT	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	164, 175
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	94, 160, 218, 255
AluI	AGCT	4 cut(s)	94, 160, 218, 255
ApeKI	GCWGC	2 cut(s)	6, 94
ApoI	RAATTY	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	235
AsuNHI	GCTAGC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	18, 81
BciT130I	CCWGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	2 cut(s)	7, 95
BlsI	GCNGC	2 cut(s)	8, 96
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	18, 81
BsgI	GTGCAG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	237
Bsp19I	CCATGG	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	102
BspOI	GCTAGC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	237
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	110, 219
BstDSI	CCRYGG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	18, 81
BstZ17I	GTATAC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	99
CviAII	CATG	2 cut(s)	30, 184
CviJI	RGCY	6 cut(s)	94, 160, 188, 218, 255, 263
CviKI_1	RGCY	6 cut(s)	94, 160, 188, 218, 255, 263
DdeI	CTNAG	2 cut(s)	110, 219
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	33, 187
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	29, 183
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	7, 95
Fsp4HI	GCNGC	2 cut(s)	7, 95
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	2 cut(s)	7, 95
GsuI	CTGGAG	1 cut(s)	210
Hin1II	CATG	2 cut(s)	33, 187
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	6, 69, 213
HpyF3I	CTNAG	2 cut(s)	110, 219
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	33, 187
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	4 cut(s)	7, 42, 69, 174
Lsp1109I	GCAGC	2 cut(s)	18, 81
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	167
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	163
MfeI	CAATTG	1 cut(s)	123
MluCI	AATT	3 cut(s)	41, 123, 200
MnlI	CCTC	4 cut(s)	121, 130, 133, 185
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	237
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	33, 187
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	8, 96
Psp1406I	AACGTT	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
SatI	GCNGC	2 cut(s)	7, 95
Sau3AI	GATC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	8 cut(s)	61, 96, 162, 170, 220, 225, 233, 257
Sse9I	AATT	3 cut(s)	41, 123, 200
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	170
TasI	AATT	3 cut(s)	41, 123, 200
TfiI	GAWTC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	6, 94
TspDTI	ATGAA	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.