Rh3DG372700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009731
Physical Location & Seq
Reverse (-)
47666661 .. 47672048
5388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG372700.1

Sequence Viewer

Length: 795 bp
ATGCCCATTGCCATTCTTTTTCTTTCAACGGTATTCACACATACATCGAGCTCTGACTTCCAACGAACCGCATCACAATTTTGGTTACCTGAAGTGGGTTGGACGGCGAAGAGGGTCTCATCACTGAACGAAAACAGAAGAAGTGTTGCTGGGTTTGGGATTTCAGTGATTGAAGTTGACAAGAAGGTCGTGATTGCGGCTGGATACCTGCATCTATATAAGGATTCTAGGCAACAGCAGCTCCGCAGGTTCGTTTCGTTGTTATGGGCAACATCAAAGACGGAGACTTTGCTTTCAGCTGGAAAGCAACCATTCTCATCAAGTCATTTTATGGGGGAAGACCTCCAATCCCTTAAGTATGAAAGAGCTTCAGATTTGGAGCAGCAACTTTACTCTGAAGCACATAGAAAGGTACAAAACCAGGGTGAGAGCATTCTATCATGGATTGGAGATGATTATGTTGTTATAGATTATAAGACTGCTGCACATCTTGAGCTCCAAGAGACAGCACTTGAAGAATGCAGTCATGATTTGGAGAACCTCACAAGTTTGAATAAGCTACGCACAAGTTCTGTTGCAAATAAATCTGGTGCGCTAGCAGCAAATGGAGAAGCTTCTGGTAATGAAGATCTATCAGGTCAAAAGAACCTGCTCACGCAAGAAGTTTCCTACCTTCATATATCAGTGCTAAACCCCCATTGTAGAAACTTGATACCACCTTGGTTAAAATACCAGGTTCTTGGAGGAAGGAGCTCAGATGTTCATGCAAAAACTGATCAAACAGTCAGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.55

Weight (kDa)

6.55

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AasI GACNNNNNNGTC 1 cut(s) 185
Acc36I ACCTGC 3 cut(s) 216, 237, 657
AciI CCGC 3 cut(s) 69, 197, 244
AcuI CTGAAG 3 cut(s) 111, 354, 417
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 95
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 4 cut(s) 27, 173, 515, 553
AjnI CCWGG 2 cut(s) 420, 732
AluBI AGCT 8 cut(s) 51, 241, 299, 368, 496, 559, 614, 753
AluI AGCT 8 cut(s) 51, 241, 299, 368, 496, 559, 614, 753
Alw21I GWGCWC 3 cut(s) 53, 498, 755
Alw26I GTCTC 3 cut(s) 121, 278, 497
ApeKI GCWGC 4 cut(s) 238, 382, 482, 599
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AspLEI GCGC 1 cut(s) 595
AsuHPI GGTGA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 595
BanII GRGCYC 3 cut(s) 53, 498, 755
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 3 cut(s) 53, 498, 755
BbvI GCAGC 4 cut(s) 250, 394, 469, 611
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 422, 734
BciVI GTATCC 1 cut(s) 197
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 3 cut(s) 121, 278, 497
BfaI CTAG 2 cut(s) 228, 596
BfrI CTTAAG 1 cut(s) 353
BfuAI ACCTGC 3 cut(s) 216, 237, 657
BfuI GTATCC 1 cut(s) 197
BglII AGATCT 1 cut(s) 628
BisI GCNGC 5 cut(s) 198, 239, 383, 483, 600
BlsI GCNGC 5 cut(s) 199, 240, 384, 484, 601
Bme1390I CCNGG 2 cut(s) 422, 734
BmrFI CCNGG 2 cut(s) 422, 734
BmsI GCATC 2 cut(s) 80, 220
BmtI GCTAGC 1 cut(s) 599
BpiI GAAGAC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 421, 719
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 6
BseBI CCWGG 2 cut(s) 422, 734
BseDI CCNNGG 2 cut(s) 421, 719
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 1 cut(s) 768
BseXI GCAGC 4 cut(s) 250, 394, 469, 611
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 468
BsiHKAI GWGCWC 3 cut(s) 53, 498, 755
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 3 cut(s) 121, 278, 497
BsmI GAATGC 2 cut(s) 432, 524
Bso31I GGTCTC 1 cut(s) 121
Bsp1286I GDGCHC 3 cut(s) 53, 498, 755
Bsp143I GATC 2 cut(s) 628, 775
BspACI CCGC 3 cut(s) 69, 197, 244
BspCNI CTCAG 1 cut(s) 767
BspHI TCATGA 1 cut(s) 526
BspMI ACCTGC 3 cut(s) 216, 237, 657
BspOI GCTAGC 1 cut(s) 599
BspTI CTTAAG 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 421, 719
BssMI GATC 2 cut(s) 628, 775
BssT1I CCWWGG 1 cut(s) 719
Bst2UI CCWGG 2 cut(s) 422, 734
Bst4CI ACNGT 2 cut(s) 31, 784
Bst6I CTCTTC 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 1 cut(s) 754
BstEII GGTNACC 1 cut(s) 84
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 2 cut(s) 631, 778
BstMAI GTCTC 3 cut(s) 121, 278, 497
BstMBI GATC 2 cut(s) 628, 775
BstMWI GCNNNNNNNGC 2 cut(s) 238, 599
BstNI CCWGG 2 cut(s) 422, 734
BstPI GGTNACC 1 cut(s) 84
BstSCI CCNGG 2 cut(s) 420, 732
BstV1I GCAGC 4 cut(s) 250, 394, 469, 611
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 628
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 1 cut(s) 628
BsuI GTATCC 1 cut(s) 197
BtsIMutI CAGTG 3 cut(s) 122, 171, 690
BveI ACCTGC 3 cut(s) 216, 237, 657
Cac8I GCNNGC 1 cut(s) 597
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 595
CsiI ACCWGGT 1 cut(s) 732
Csp6I GTAC 1 cut(s) 413
CviAII CATG 3 cut(s) 441, 527, 764
CviJI RGCY 9 cut(s) 51, 200, 241, 299, 368, 496, 559, 614, 753
CviKI_1 RGCY 9 cut(s) 51, 200, 241, 299, 368, 496, 559, 614, 753
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 1 cut(s) 754
DpnI GATC 2 cut(s) 630, 777
DpnII GATC 2 cut(s) 628, 775
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Ecl136II GAGCTC 3 cut(s) 51, 496, 753
Eco130I CCWWGG 1 cut(s) 719
Eco24I GRGCYC 3 cut(s) 53, 498, 755
Eco31I GGTCTC 1 cut(s) 121
Eco53kI GAGCTC 3 cut(s) 51, 496, 753
Eco57I CTGAAG 3 cut(s) 111, 354, 417
Eco91I GGTNACC 1 cut(s) 84
EcoICRI GAGCTC 3 cut(s) 51, 496, 753
EcoO65I GGTNACC 1 cut(s) 84
EcoRII CCWGG 2 cut(s) 420, 732
EcoT14I CCWWGG 1 cut(s) 719
EcoT38I GRGCYC 3 cut(s) 53, 498, 755
ErhI CCWWGG 1 cut(s) 719
FaeI CATG 3 cut(s) 444, 530, 767
FatI CATG 3 cut(s) 440, 526, 763
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 5 cut(s) 198, 239, 383, 483, 600
FriOI GRGCYC 3 cut(s) 53, 498, 755
Fsp4HI GCNGC 5 cut(s) 198, 239, 383, 483, 600
FspBI CTAG 2 cut(s) 228, 596
GlaI GCGC 1 cut(s) 594
GluI GCNGC 5 cut(s) 198, 239, 383, 483, 600
GsaI CCCAGC 1 cut(s) 153
HhaI GCGC 1 cut(s) 595
Hin1II CATG 3 cut(s) 444, 530, 767
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 5 cut(s) 55, 373, 397, 757, 788
Hpy188III TCNNGA 3 cut(s) 190, 491, 527
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 178, 683, 741
HpyCH4III ACNGT 2 cut(s) 31, 784
HpyCH4V TGCA 5 cut(s) 211, 485, 522, 578, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 599
HpyF3I CTNAG 1 cut(s) 754
Hsp92II CATG 3 cut(s) 444, 530, 767
HspAI GCGC 1 cut(s) 593
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 2 cut(s) 628, 775
LmnI GCTCC 4 cut(s) 246, 379, 501, 750
Lsp1109I GCAGC 4 cut(s) 250, 394, 469, 611
LweI GCATC 2 cut(s) 80, 220
MabI ACCWGGT 1 cut(s) 732
MaeI CTAG 2 cut(s) 228, 596
MaeIII GTNAC 1 cut(s) 84
MalI GATC 2 cut(s) 630, 777
MboI GATC 2 cut(s) 628, 775
MboII GAAGA 5 cut(s) 121, 150, 350, 527, 638
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 3 cut(s) 53, 498, 755
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 80, 85
MnlI CCTC 4 cut(s) 105, 353, 551, 737
MseI TTAA 3 cut(s) 354, 725, 793
MspA1I CMGCKG 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 422, 734
Mva1269I GAATGC 2 cut(s) 432, 524
MvaI CCWGG 2 cut(s) 422, 734
MwoI GCNNNNNNNGC 2 cut(s) 238, 599
NdeII GATC 2 cut(s) 628, 775
NheI GCTAGC 1 cut(s) 595
NlaIII CATG 3 cut(s) 444, 530, 767
PagI TCATGA 1 cut(s) 526
PctI GAATGC 2 cut(s) 432, 524
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 5 cut(s) 199, 240, 384, 484, 601
PsiI TTATAA 1 cut(s) 474
Psp124BI GAGCTC 3 cut(s) 53, 498, 755
Psp6I CCWGG 2 cut(s) 420, 732
PspEI GGTNACC 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 2 cut(s) 420, 732
PsuI RGATCY 1 cut(s) 628
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SacI GAGCTC 3 cut(s) 53, 498, 755
SaqAI TTAA 3 cut(s) 354, 725, 793
SatI GCNGC 5 cut(s) 198, 239, 383, 483, 600
Sau3AI GATC 2 cut(s) 628, 775
ScrFI CCNGG 2 cut(s) 422, 734
SduI GDGCHC 3 cut(s) 53, 498, 755
SexAI ACCWGGT 1 cut(s) 732
SfaNI GCATC 2 cut(s) 80, 220
SmlI CTYRAG 2 cut(s) 353, 491
SmoI CTYRAG 2 cut(s) 353, 491
Sse9I AATT 1 cut(s) 77
SsiI CCGC 3 cut(s) 69, 197, 244
SspMI CTAG 2 cut(s) 228, 596
SstI GAGCTC 3 cut(s) 53, 498, 755
StyD4I CCNGG 2 cut(s) 420, 732
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 2 cut(s) 31, 784
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 3 cut(s) 354, 725, 793
Tru9I TTAA 3 cut(s) 354, 725, 793
TscAI CASTG 3 cut(s) 129, 171, 690
TseI GCWGC 4 cut(s) 238, 382, 482, 599
TspDTI ATGAA 4 cut(s) 375, 639, 665, 752
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 3 cut(s) 129, 171, 690
Vha464I CTTAAG 1 cut(s) 353
XspI CTAG 2 cut(s) 228, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.