Rorug04G0139100

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003635
Physical Location & Seq
Forward (+)
22747103 .. 22757264
10162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0139100.1

Sequence Viewer

Length: 1158 bp
ATGGGTTCTGCTTCTCTGATCAATCCGTTGACATCGTCTCTCTGCGCCCCCAAGTCAGAGCTCACTACACCCAAACACCTATGGGTGGTAGGCCCCACCTCCACGTCGCTGAGTCTGAGGTCCAGCCAGAGCAAGAGAGGAGGGTCTGTTGTGTGCAAGGCCGTGTCTGTGAAGCCGGAGACCGCAGTCGAGGGTCTCAACATTGCCGAAGATGTTACTCAGCTTATTGGGAAAACACCGATGGTGTACCTGAATAATATTATAAAGGGGTCTGTTGCGAACATTGCTGCAAAGCTTGAAATTATGGAGCCATGTTGCAGTGTCAAGGACAGGATAGGATACAGTATGATAACTGATGCTGAGCAAAGAGGACTTATAAAGCCTGGACAGAGTGTTCTGGTGGAACCCACAAGTGGAAACACGGGCATTGGTCTTGCATTTATAGCGGCCAGTAAAGGATACAAACTCATCTTGACAATGCCAGCTTCAATGAGCTTGGAAAGAAGGGTTCTTTTAAAGGCATTTGGAGCTGAACTTGTTTTGACCAACTCAGCAAAGGGGATGAAGGGAGCAGTTCAGAAAGCTGAAGAAATATTGAAAAGTACACCCAATGCATACATGCTTCAACAGTTTGACAATCCTGCTAATCCTAAGGTACACTATGAGACAACTGGTCCAGAGATCTGGGAAGATACAAAAGGCAAGGTGGATATATTTGTTGGGGGAATTGGAACTGGCGGAACTATTTCTGGGGTCGGGCGGTTCCTTAAAGAGAAAAATCCTAAAATAAAGATCATTGGTGTAGAGCCGACGGAAAGCAACATCCTTTCAGGTGGAAAACCCGGTCCCCACAAAATTCAAGGGATTGGAGCTGGATTTATACCTAGAAATTTGCACCAGGATGTCGTTGATGAAATTATAGAGATCTCAAGTGATGAAGCTGTTGAAATGGCAAAGCAATTAGCACTTCAGGAAGGCTTGTTGGTTGGCATTTCTTCAGGAGCAGCAGCTGCTGCTGCTCTCAAGGTTGGTAAGAGGCCTGAAAATGCAGGGAAGCTTATCACGGTGGTCTTTCCAAGCTTTGGGGAGCGATATCTCTCCACTGTTCTTTTCCAGTCAATTAGAGAAGAATGTGAGAAGATGCAACCCGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 PRT_C

Protein Analysis

385

Amino Acids

40.79

Weight (kDa)

8.63

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 72 - 357 1.7e-74 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 263, 377
AccB7I CCANNNNNTGG 1 cut(s) 1082
AciI CCGC 4 cut(s) 183, 446, 738, 760
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 2 cut(s) 855, 889
AcuI CTGAAG 3 cut(s) 606, 953, 981
AfaI GTAC 3 cut(s) 248, 604, 657
AfiI CCNNNNNNNGG 3 cut(s) 85, 413, 1082
AgsI TTSAA 6 cut(s) 299, 489, 598, 626, 860, 947
AhdI GACNNNNNGTC 1 cut(s) 672
AjiI CACGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 382, 897
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 4 cut(s) 42, 173, 200, 659
AlwNI CAGNNNCTG 2 cut(s) 1010, 1013
AoxI GGCC 4 cut(s) 91, 159, 447, 1037
ApeKI GCWGC 6 cut(s) 287, 1004, 1007, 1010, 1013, 1016
ApoI RAATTY 2 cut(s) 855, 889
Asp700I GAANNNNTTC 1 cut(s) 745
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 4 cut(s) 92, 120, 674, 845
AsuC2I CCSGG 1 cut(s) 843
AvaII GGWCC 3 cut(s) 120, 674, 845
AxyI CCTNAGG 1 cut(s) 651
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 6 cut(s) 274, 997, 1000, 1003, 1016, 1019
BccI CCATC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 2 cut(s) 384, 899
BciVI GTATCC 2 cut(s) 332, 452
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 4 cut(s) 42, 173, 200, 659
BfaI CTAG 1 cut(s) 885
BfuI GTATCC 2 cut(s) 332, 452
BglII AGATCT 2 cut(s) 681, 924
BisI GCNGC 7 cut(s) 288, 447, 1005, 1008, 1011, 1014, 1017
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 7 cut(s) 289, 448, 1006, 1009, 1012, 1015, 1018
Bme1390I CCNGG 3 cut(s) 384, 843, 899
Bme18I GGWCC 3 cut(s) 120, 674, 845
BmeRI GACNNNNNGTC 1 cut(s) 672
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 4 cut(s) 92, 120, 674, 845
BmiI GGNNCC 5 cut(s) 94, 309, 405, 764, 847
BmrFI CCNGG 3 cut(s) 384, 843, 899
BmsI GCATC 2 cut(s) 346, 1131
BoxI GACNNNNGTC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 913, 1007
BpuMI CCSGG 1 cut(s) 843
BsaI GGTCTC 2 cut(s) 173, 200
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 413, 1082
Bse1I ACTGG 4 cut(s) 450, 676, 739, 1114
Bse21I CCTNAGG 1 cut(s) 651
Bse3DI GCAATG 2 cut(s) 201, 282
BseBI CCWGG 2 cut(s) 384, 899
BseGI GGATG 3 cut(s) 567, 822, 907
BseLI CCNNNNNNNGG 3 cut(s) 85, 413, 1082
BseMI GCAATG 2 cut(s) 201, 282
BseMII CTCAG 5 cut(s) 101, 107, 233, 351, 564
BseNI ACTGG 4 cut(s) 450, 676, 739, 1114
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 6 cut(s) 274, 997, 1000, 1003, 1016, 1019
BshFI GGCC 4 cut(s) 93, 161, 449, 1039
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 176, 843
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 3 cut(s) 85, 413, 1082
BsmAI GTCTC 4 cut(s) 42, 173, 200, 659
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 4 cut(s) 93, 161, 449, 1039
Bso31I GGTCTC 2 cut(s) 173, 200
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 4 cut(s) 18, 681, 792, 924
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 4 cut(s) 183, 446, 738, 760
BspANI GGCC 4 cut(s) 93, 161, 449, 1039
BspCNI CTCAG 5 cut(s) 102, 108, 232, 352, 563
BspLI GGNNCC 5 cut(s) 94, 309, 405, 764, 847
BspTNI GGTCTC 2 cut(s) 173, 200
BsrDI GCAATG 2 cut(s) 201, 282
BsrI ACTGG 4 cut(s) 450, 676, 739, 1114
BssMI GATC 4 cut(s) 18, 681, 792, 924
Bst2UI CCWGG 2 cut(s) 384, 899
Bst4CI ACNGT 4 cut(s) 344, 630, 1066, 1105
BstAPI GCANNNNNTGC 2 cut(s) 1010, 1013
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 6 cut(s) 110, 116, 219, 360, 550, 651
BstF5I GGATG 3 cut(s) 567, 822, 907
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 21, 684, 795, 927
BstMAI GTCTC 4 cut(s) 42, 173, 200, 659
BstMBI GATC 4 cut(s) 18, 681, 792, 924
BstMWI GCNNNNNNNGC 6 cut(s) 284, 443, 527, 1010, 1013, 1016
BstNI CCWGG 2 cut(s) 384, 899
BstNSI RCATGY 1 cut(s) 622
BstPAI GACNNNNGTC 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 382, 841, 897
BstV1I GCAGC 6 cut(s) 274, 997, 1000, 1003, 1016, 1019
BstX2I RGATCY 2 cut(s) 681, 924
BstXI CCANNNNNNTGG 1 cut(s) 684
BstYI RGATCY 2 cut(s) 681, 924
Bsu36I CCTNAGG 1 cut(s) 651
BsuI GTATCC 2 cut(s) 332, 452
BsuRI GGCC 4 cut(s) 93, 161, 449, 1039
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 567, 822, 907
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 325, 1101
Cac8I GCNNGC 1 cut(s) 483
CaiI CAGNNNCTG 2 cut(s) 1010, 1013
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 4 cut(s) 92, 120, 674, 845
Csp6I GTAC 3 cut(s) 247, 603, 656
CviAII CATG 3 cut(s) 312, 619, 1155
CviQI GTAC 3 cut(s) 247, 603, 656
DdeI CTNAG 6 cut(s) 110, 116, 219, 360, 550, 651
DpnI GATC 4 cut(s) 20, 683, 794, 926
DpnII GATC 4 cut(s) 18, 681, 792, 924
DraI TTTAAA 1 cut(s) 516
DriI GACNNNNNGTC 1 cut(s) 672
EaeI YGGCCR 1 cut(s) 447
Eam1105I GACNNNNNGTC 1 cut(s) 672
EciI GGCGGA 1 cut(s) 753
Ecl136II GAGCTC 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 1039
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 2 cut(s) 173, 200
Eco32I GATATC 1 cut(s) 1094
Eco47I GGWCC 3 cut(s) 120, 674, 845
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 3 cut(s) 606, 953, 981
Eco81I CCTNAGG 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 382, 897
EcoRV GATATC 1 cut(s) 1094
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 3 cut(s) 315, 622, 1158
FaqI GGGAC 1 cut(s) 831
FatI CATG 3 cut(s) 311, 618, 1154
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 7 cut(s) 288, 447, 1005, 1008, 1011, 1014, 1017
FokI GGATG 3 cut(s) 574, 809, 914
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 7 cut(s) 288, 447, 1005, 1008, 1011, 1014, 1017
FspBI CTAG 1 cut(s) 885
GlaI GCGC 1 cut(s) 46
GluI GCNGC 7 cut(s) 288, 447, 1005, 1008, 1011, 1014, 1017
HaeIII GGCC 4 cut(s) 93, 161, 449, 1039
HapII CCGG 2 cut(s) 176, 843
HhaI GCGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 315, 622, 1158
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 3 cut(s) 293, 1055, 1078
HinfI GANTC 1 cut(s) 112
HpaII CCGG 2 cut(s) 176, 843
Hpy166II GTNNAC 4 cut(s) 30, 247, 605, 658
Hpy188I TCNGA 4 cut(s) 18, 58, 117, 579
Hpy188III TCNNGA 4 cut(s) 472, 677, 971, 999
Hpy8I GTNNAC 4 cut(s) 30, 247, 605, 658
Hpy99I CGWCG 2 cut(s) 109, 814
HpyAV CCTTC 3 cut(s) 498, 559, 968
HpyCH4III ACNGT 4 cut(s) 344, 630, 1066, 1105
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 8 cut(s) 156, 290, 318, 437, 614, 895, 1049, 1144
HpyF10VI GCNNNNNNNGC 6 cut(s) 284, 443, 527, 1010, 1013, 1016
HpyF3I CTNAG 6 cut(s) 110, 116, 219, 360, 550, 651
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 3 cut(s) 315, 622, 1158
HspAI GCGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 18, 681, 792, 924
LmnI GCTCC 6 cut(s) 307, 527, 569, 869, 1001, 1087
Lsp1109I GCAGC 6 cut(s) 274, 997, 1000, 1003, 1016, 1019
LweI GCATC 2 cut(s) 346, 1131
MaeI CTAG 1 cut(s) 885
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 20, 683, 794, 926
MboI GATC 4 cut(s) 18, 681, 792, 924
MboII GAAGA 6 cut(s) 221, 599, 701, 987, 1139, 1150
MflI RGATCY 2 cut(s) 681, 924
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 7 cut(s) 300, 726, 855, 889, 915, 959, 1119
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 7 cut(s) 109, 111, 131, 134, 184, 362, 1029
Mph1103I ATGCAT 1 cut(s) 616
MroXI GAANNNNTTC 1 cut(s) 745
MseI TTAA 2 cut(s) 515, 768
MslI CAYNNNNRTG 1 cut(s) 900
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 2 cut(s) 176, 843
MspR9I CCNGG 3 cut(s) 384, 843, 899
MvaI CCWGG 2 cut(s) 384, 899
MwoI GCNNNNNNNGC 6 cut(s) 284, 443, 527, 1010, 1013, 1016
NciI CCSGG 1 cut(s) 843
NdeII GATC 4 cut(s) 18, 681, 792, 924
NlaIII CATG 3 cut(s) 315, 622, 1158
NlaIV GGNNCC 5 cut(s) 94, 309, 405, 764, 847
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 1 cut(s) 622
PceI AGGCCT 1 cut(s) 1039
PdmI GAANNNNTTC 1 cut(s) 745
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 1082
PkrI GCNGC 7 cut(s) 289, 448, 1006, 1009, 1012, 1015, 1018
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PshAI GACNNNNGTC 1 cut(s) 185
PsiI TTATAA 2 cut(s) 263, 377
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 382, 897
PspGI CCWGG 2 cut(s) 382, 897
PspN4I GGNNCC 5 cut(s) 94, 309, 405, 764, 847
PspPI GGNCC 4 cut(s) 92, 120, 674, 845
PstNI CAGNNNCTG 2 cut(s) 1010, 1013
PsuI RGATCY 2 cut(s) 681, 924
PsyI GACNNNGTC 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 3 cut(s) 248, 604, 657
RsaNI GTAC 3 cut(s) 247, 603, 656
RseI CAYNNNNRTG 1 cut(s) 900
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 515, 768
SatI GCNGC 7 cut(s) 288, 447, 1005, 1008, 1011, 1014, 1017
Sau3AI GATC 4 cut(s) 18, 681, 792, 924
Sau96I GGNCC 4 cut(s) 92, 120, 674, 845
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 3 cut(s) 384, 843, 899
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 2 cut(s) 346, 1131
SinI GGWCC 3 cut(s) 120, 674, 845
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 928, 1022
SmoI CTYRAG 2 cut(s) 928, 1022
Sse9I AATT 7 cut(s) 300, 726, 855, 889, 915, 959, 1119
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 4 cut(s) 183, 446, 738, 760
SspI AATATT 2 cut(s) 259, 594
SspMI CTAG 1 cut(s) 885
SstI GAGCTC 1 cut(s) 63
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 3 cut(s) 382, 841, 897
TaaI ACNGT 4 cut(s) 344, 630, 1066, 1105
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 189
TasI AATT 7 cut(s) 300, 726, 855, 889, 915, 959, 1119
TatI WGTACW 1 cut(s) 602
TauI GCSGC 1 cut(s) 449
Tru1I TTAA 2 cut(s) 515, 768
Tru9I TTAA 2 cut(s) 515, 768
TscAI CASTG 2 cut(s) 325, 1108
TseI GCWGC 6 cut(s) 287, 1004, 1007, 1010, 1013, 1016
TspDTI ATGAA 3 cut(s) 578, 927, 951
TspGWI ACGGA 2 cut(s) 15, 827
TspRI CASTG 2 cut(s) 325, 1108
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 1082
VpaK11BI GGWCC 3 cut(s) 120, 674, 845
XapI RAATTY 2 cut(s) 855, 889
XceI RCATGY 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 745
XspI CTAG 1 cut(s) 885
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.