Rh4CG212500

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003635
Physical Location & Seq
Reverse (-)
44242110 .. 44244376
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG212500.1

Sequence Viewer

Length: 438 bp
ATGTCTAGTAGTAAAGCTGAAGAACCTGTAAATGAGCAAGCAGTTGCAAATAAGTTTGCTGCCATGAGGTCTGAACTCAACCAAATTTACTCTAAAATCACTGAGCTAGAGATGGACGTGAGTGAGCACTCATTGGTGATCAATGCCATCCAGCCACTCGACCCATCCAGGCGGTGCTTCCGAATGATTGGAGGTGTGCTGGTGGAGAGAACCATCAAGGAGGTCCTGCCTGCTGTGCAGCGTAACAAAGAAGGGATTGAGGAGGTTATTACTCGGCTGAATGAGGCTTTGGAAAGGAAGAAAAAAGAAATTTCTGACTTTGAGGCTAAGTACAAGATCCGGATAAGAAAGAATGACAGTGAGGAGAAGGATGATGGTGCTCGCAAAGAAGGAACTGCTCAAGGAGTCCTGGTCGGCCCTGCTGGTGGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

145

Amino Acids

16.22

Weight (kDa)

5.67

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 13 - 117 1.6e-26 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 2 cut(s) 84, 309
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 425
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 2 cut(s) 167, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 2 cut(s) 17, 106
AluI AGCT 2 cut(s) 17, 106
Alw21I GWGCWC 2 cut(s) 129, 382
AlwI GGATC 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 2 cut(s) 59, 238
ApoI RAATTY 2 cut(s) 84, 309
AspS9I GGNCC 2 cut(s) 223, 416
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 129, 382
BbvI GCAGC 2 cut(s) 46, 250
BccI CCATC 5 cut(s) 106, 155, 172, 221, 368
BciT130I CCWGG 2 cut(s) 169, 410
BclI TGATCA 1 cut(s) 138
BfaI CTAG 2 cut(s) 6, 107
BisI GCNGC 2 cut(s) 60, 239
BlsI GCNGC 2 cut(s) 61, 240
Bme1390I CCNGG 2 cut(s) 169, 410
Bme18I GGWCC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 223, 416
BmrFI CCNGG 2 cut(s) 169, 410
BpuEI CTTGAG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 425
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 2 cut(s) 169, 410
BseGI GGATG 3 cut(s) 147, 164, 376
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 275, 377
BseXI GCAGC 2 cut(s) 46, 250
BsgI GTGCAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 129, 382
BsiSI CCGG 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 425
BsnI GGCC 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 129, 382
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 138, 336
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 339
BspPI GGATC 1 cut(s) 331
BssMI GATC 2 cut(s) 138, 336
Bst2UI CCWGG 2 cut(s) 169, 410
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 39, 231, 382
BstDEI CTNAG 2 cut(s) 102, 327
BstF5I GGATG 3 cut(s) 147, 164, 376
BstKTI GATC 2 cut(s) 141, 339
BstMBI GATC 2 cut(s) 138, 336
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 2 cut(s) 169, 410
BstSCI CCNGG 2 cut(s) 167, 408
BstV1I GCAGC 2 cut(s) 46, 250
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuRI GGCC 1 cut(s) 417
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 147, 164, 376
BtsIMutI CAGTG 2 cut(s) 99, 364
Cac8I GCNNGC 3 cut(s) 39, 231, 382
Cfr13I GGNCC 2 cut(s) 223, 416
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 17, 106, 154, 277, 287, 326, 417
CviKI_1 RGCY 7 cut(s) 17, 106, 154, 277, 287, 326, 417
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 2 cut(s) 102, 327
DpnI GATC 2 cut(s) 140, 338
DpnII GATC 2 cut(s) 138, 336
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 167, 408
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 60, 239
FokI GGATG 3 cut(s) 134, 151, 383
Fsp4HI GCNGC 2 cut(s) 60, 239
FspBI CTAG 2 cut(s) 6, 107
GluI GCNGC 2 cut(s) 60, 239
HaeIII GGCC 1 cut(s) 417
HapII CCGG 1 cut(s) 340
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 405
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 73, 182, 316
Hpy188III TCNNGA 1 cut(s) 340
HpyAV CCTTC 3 cut(s) 245, 361, 383
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 47, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 2 cut(s) 102, 327
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 336
Lsp1109I GCAGC 2 cut(s) 46, 250
MaeI CTAG 2 cut(s) 6, 107
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 140, 338
MboI GATC 2 cut(s) 138, 336
MboII GAAGA 2 cut(s) 32, 310
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 129, 382
MluCI AATT 2 cut(s) 84, 309
MlyI GAGTC 1 cut(s) 414
MnlI CCTC 8 cut(s) 60, 185, 214, 253, 256, 277, 316, 355
MroI TCCGGA 1 cut(s) 339
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 169, 410
MvaI CCWGG 2 cut(s) 169, 410
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 2 cut(s) 138, 336
NlaIII CATG 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 253
PkrI GCNGC 2 cut(s) 61, 240
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PpuMI RGGWCCY 1 cut(s) 223
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 167, 408
PspGI CCWGG 2 cut(s) 167, 408
PspPI GGNCC 2 cut(s) 223, 416
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SatI GCNGC 2 cut(s) 60, 239
Sau3AI GATC 2 cut(s) 138, 336
Sau96I GGNCC 2 cut(s) 223, 416
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 2 cut(s) 169, 410
SduI GDGCHC 2 cut(s) 129, 382
SetI ASST 8 cut(s) 19, 28, 71, 108, 120, 196, 225, 267
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 2 cut(s) 84, 309
SsiI CCGC 1 cut(s) 172
SspMI CTAG 2 cut(s) 6, 107
StyD4I CCNGG 2 cut(s) 167, 408
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 84, 309
TatI WGTACW 1 cut(s) 330
TscAI CASTG 2 cut(s) 106, 364
TseI GCWGC 2 cut(s) 59, 238
TspRI CASTG 2 cut(s) 106, 364
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 2 cut(s) 84, 309
XspI CTAG 2 cut(s) 6, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.