AT3G22480

Prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003635
Physical Location & Seq
Forward (+)
7967989 .. 7969705
1717 bp
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UTR
Exon/CDS
Intron
AT3G22480.1

Sequence Viewer

Length: 447 bp
ATGGCCAGCAAATCTGGAAGCGGTGGCCTAAGAGAACCGCCGAATGAGCAAGCTGTTTTGAACATGTATGAAGGCAAGAGATCAGAGCTAAGCCAAATCTACTCCAACATAACCGACCTCGAGATGCAAGTGAGCGAACATTCTCTGGTCATTAACGCCATTCAGCCTCTCGACCAATCGAGGAAATGCTTCCGCATGATAGGAGGCGTTCTTGTCGAAAGAACCATCAAAGAGGTACTACCAGCTGTCCAACGTAACAAGGACGGACTTGAAGAGGTTGTGAGGAAGCTATACGAGACATTGGAGAAAAAGAAGAAAGATCTTACAGAGTTTGAAGCTAAGTATAAGATCAGGATAACGAAACAAGAAGATAACAAGGAAGGAGGTAACAAGAAGGAAGGTAATGCTCAAGGTGTTCTTGTTGGAGCTGCCAGTTCAAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

148

Amino Acids

16.53

Weight (kDa)

8.59

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 17 - 121 2.7e-24 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 21, 38, 193
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 237
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 4 cut(s) 61, 272, 335, 438
AluBI AGCT 6 cut(s) 53, 88, 245, 289, 338, 428
AluI AGCT 6 cut(s) 53, 88, 245, 289, 338, 428
Alw26I GTCTC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 2 cut(s) 3, 25
ApeKI GCWGC 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 290
BglII AGATCT 1 cut(s) 319
BisI GCNGC 1 cut(s) 429
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 119
BmsI GCATC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 393
Bse1I ACTGG 2 cut(s) 432, 442
BseNI ACTGG 2 cut(s) 432, 442
BseXI GCAGC 1 cut(s) 415
BshFI GGCC 2 cut(s) 5, 27
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 5, 27
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 3 cut(s) 80, 319, 348
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 3 cut(s) 21, 38, 193
BspANI GGCC 2 cut(s) 5, 27
BsrI ACTGG 2 cut(s) 432, 442
BssMI GATC 3 cut(s) 80, 319, 348
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 7, 51
BstDEI CTNAG 3 cut(s) 29, 89, 339
BstKTI GATC 3 cut(s) 83, 322, 351
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 80, 319, 348
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 2 cut(s) 5, 27
Cac8I GCNNGC 2 cut(s) 7, 51
Csp6I GTAC 1 cut(s) 236
CviAII CATG 2 cut(s) 64, 196
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 3 cut(s) 29, 89, 339
DpnI GATC 3 cut(s) 82, 321, 350
DpnII GATC 3 cut(s) 80, 319, 348
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 119
FaeI CATG 2 cut(s) 67, 199
FaiI YATR 6 cut(s) 65, 69, 110, 197, 292, 345
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 2 cut(s) 63, 195
Fnu4HI GCNGC 1 cut(s) 429
Fsp4HI GCNGC 1 cut(s) 429
GluI GCNGC 1 cut(s) 429
HaeIII GGCC 2 cut(s) 5, 27
Hin1II CATG 2 cut(s) 67, 199
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 4 cut(s) 15, 121, 170, 352
HpyAV CCTTC 4 cut(s) 65, 374, 388, 392
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 3 cut(s) 29, 89, 339
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 67, 199
Kzo9I GATC 3 cut(s) 80, 319, 348
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 4 cut(s) 19, 131, 255, 337
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 1 cut(s) 114
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 254, 386
MalI GATC 3 cut(s) 82, 321, 350
MboI GATC 3 cut(s) 80, 319, 348
MboII GAAGA 3 cut(s) 284, 325, 380
MflI RGATCY 1 cut(s) 319
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 129, 274, 403
MnlI CCTC 8 cut(s) 128, 174, 177, 197, 226, 268, 276, 377
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 188
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 3 cut(s) 80, 319, 348
NlaIII CATG 2 cut(s) 67, 199
NspI RCATGY 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 119
PciI ACATGT 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 430
PscI ACATGT 1 cut(s) 63
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 3 cut(s) 80, 319, 348
SfaNI GCATC 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 119, 408
SmoI CTYRAG 2 cut(s) 119, 408
SsiI CCGC 3 cut(s) 21, 38, 193
TaiI ACGT 1 cut(s) 256
TaqI TCGA 4 cut(s) 120, 171, 179, 216
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 279
XceI RCATGY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.