Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005725.1

Orthogroup ID

OG0003635

Physical Location & Seq

Genomic Coordinates Reverse (-)

22092 .. 24122

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005725.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgtcctcatcttctctatcgatctcttctgtgtcttcaaaaaacccgattccttcgctcctccgccacacgccccaaacccaaagcattctcggaccccagcttcttcaacctcctttggtacttgccttcaacttggattattcgagtactgttgcaagcttcgattcactgccaattaccgcacacagagacggaagagtcatgtctagtagtaaagctgaagaacctgtaaatgagcaagcagttgcaaataagtttgctgccatgaggtctgaactcaaccaaatttactctaaaatcactgagctagagatggacgtgagtgagcactcattggtgatcaatgccatccagccactcgacccatccaggcggtgcttccgaatgattggaggtgtgctggtggagagaaccatcaaggaggtcctgcctgctgtgcagcgtaacaaagaagggattgaggaggttattactcggctgaatgaggctttggaaaggaagaaaaaagaaatttctgactttgaggccaagtacaagatccggataagaaagaacgacagtgaggagaaggatgatggtgctcgcaaagaaggaactgctcaaggagtcctggtcggccctgctggtggaagcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

213

Amino Acids

23.46

Weight (kDa)

6.36

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22480 AT3G22480
fragaria_vesca	FvH4_4g15650
malus_domestica	MD16G1194400.v1.1
prunus_persica	Prupe.1G014300_v2.0.a1 Prupe.1G014300_v2.0.a1
pyrus_communis	pycom13g16600 pycom16g16420
rosa_chinensis	RchiOBHm_Chr1g0362551 RchiOBHm_Chr4g0387021 RchiOBHm_Chr4g0416141
rosa_laevigata	RLG00000008012 RLG00000010149 RLG00000010151
rosa_multiflora	Rmu_sc0000750.1_g000017 Rmu_sc0001474.1_g000002 Rmu_sc0005725.1_g000004 Rmu_sc0015670.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293990 Rroxscaffold_5G00360000
rosa_rugosa	Rorug01G0298800 Rorug01G0298900 Rorug04G0139100
rosa_samantha	Rh1AG308100 Rh1BG270500 Rh1CG289000 Rh1DG300700 Rh4AG014200 Rh4AG201300 Rh4BG198500 Rh4CG212500 Rh4DG198700
rosa_wichuraiana	Rw1G004170 Rw1G027340 Rw4G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AccIII	TCCGGA	1 cut(s)	543
AciI	CCGC	3 cut(s)	64, 183, 376
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	288, 513
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	3 cut(s)	123, 151, 536
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	3 cut(s)	39, 110, 133
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	371, 612
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	4 cut(s)	103, 162, 221, 310
AluI	AGCT	4 cut(s)	103, 162, 221, 310
Alw21I	GWGCWC	2 cut(s)	333, 586
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	535
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	2 cut(s)	528, 619
ApeKI	GCWGC	2 cut(s)	263, 442
ApoI	RAATTY	2 cut(s)	288, 513
AspS9I	GGNCC	3 cut(s)	95, 427, 620
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	95, 427
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	333, 586
BbvI	GCAGC	2 cut(s)	250, 454
BccI	CCATC	5 cut(s)	310, 359, 376, 425, 572
BciT130I	CCWGG	2 cut(s)	373, 614
BclI	TGATCA	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	210, 311
BisI	GCNGC	2 cut(s)	264, 443
BlsI	GCNGC	2 cut(s)	265, 444
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	373, 614
Bme18I	GGWCC	2 cut(s)	95, 427
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	95, 427, 620
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	2 cut(s)	373, 614
BpiI	GAAGAC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	588
Bsa29I	ATCGAT	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	373, 614
BseCI	ATCGAT	1 cut(s)	20
BseGI	GGATG	3 cut(s)	351, 368, 580
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMII	CTCAG	1 cut(s)	297
BseRI	GAGGAG	3 cut(s)	50, 479, 581
BseXI	GCAGC	2 cut(s)	250, 454
BseYI	CCCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	2 cut(s)	530, 621
BshVI	ATCGAT	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	333, 586
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	530, 621
Bsp1286I	GDGCHC	2 cut(s)	333, 586
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	21, 342, 540
BspACI	CCGC	3 cut(s)	64, 183, 376
BspANI	GGCC	2 cut(s)	530, 621
BspCNI	CTCAG	1 cut(s)	298
BspDI	ATCGAT	1 cut(s)	20
BspEI	TCCGGA	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	535
BssMI	GATC	3 cut(s)	21, 342, 540
Bst2UI	CCWGG	2 cut(s)	373, 614
Bst4CI	ACNGT	2 cut(s)	154, 563
Bst6I	CTCTTC	2 cut(s)	31, 193
BstC8I	GCNNGC	4 cut(s)	160, 243, 435, 586
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	351, 368, 580
BstKTI	GATC	3 cut(s)	24, 345, 543
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	21, 342, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	2 cut(s)	373, 614
BstSCI	CCNGG	2 cut(s)	371, 612
BstV1I	GCAGC	2 cut(s)	250, 454
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	530, 621
BsuTUI	ATCGAT	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	351, 368, 580
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	3 cut(s)	170, 303, 568
Cac8I	GCNNGC	4 cut(s)	160, 243, 435, 586
Cfr13I	GGNCC	3 cut(s)	95, 427, 620
ClaI	ATCGAT	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	122, 150, 535
CviAII	CATG	2 cut(s)	205, 268
CviJI	RGCY	9 cut(s)	103, 162, 221, 310, 358, 481, 491, 530, 621
CviKI_1	RGCY	9 cut(s)	103, 162, 221, 310, 358, 481, 491, 530, 621
CviQI	GTAC	3 cut(s)	122, 150, 535
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	23, 344, 542
DpnII	GATC	3 cut(s)	21, 342, 540
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	31, 193
EarI	CTCTTC	2 cut(s)	31, 193
EciI	GGCGGA	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	95, 427
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	371, 612
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	2 cut(s)	208, 271
FaiI	YATR	2 cut(s)	206, 269
FatI	CATG	2 cut(s)	204, 267
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	264, 443
FokI	GGATG	3 cut(s)	338, 355, 587
Fsp4HI	GCNGC	2 cut(s)	264, 443
FspBI	CTAG	2 cut(s)	210, 311
GluI	GCNGC	2 cut(s)	264, 443
GsaI	CCCAGC	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	530, 621
HapII	CCGG	1 cut(s)	544
Hin1II	CATG	2 cut(s)	208, 271
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	4 cut(s)	49, 167, 201, 609
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	95, 277, 386, 520
Hpy188III	TCNNGA	1 cut(s)	544
HpyAV	CCTTC	5 cut(s)	63, 139, 449, 565, 587
HpyCH4III	ACNGT	2 cut(s)	154, 563
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	158, 251, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	208, 271
Kpn2I	TCCGGA	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	21, 342, 540
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	250, 454
MaeI	CTAG	2 cut(s)	210, 311
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	23, 344, 542
MboI	GATC	3 cut(s)	21, 342, 540
MboII	GAAGA	7 cut(s)	3, 18, 27, 98, 210, 236, 514
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	2 cut(s)	333, 586
MluCI	AATT	3 cut(s)	177, 288, 513
MlyI	GAGTC	2 cut(s)	210, 618
MroI	TCCGGA	1 cut(s)	543
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	373, 614
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	2 cut(s)	373, 614
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeII	GATC	3 cut(s)	21, 342, 540
NlaIII	CATG	2 cut(s)	208, 271
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	457
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	49, 167
PkrI	GCNGC	2 cut(s)	265, 444
PleI	GAGTC	2 cut(s)	209, 617
PpsI	GAGTC	2 cut(s)	209, 617
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	371, 612
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	371, 612
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	3 cut(s)	95, 427, 620
PspPPI	RGGWCCY	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	3 cut(s)	123, 151, 536
RsaNI	GTAC	3 cut(s)	122, 150, 535
SatI	GCNGC	2 cut(s)	264, 443
Sau3AI	GATC	3 cut(s)	21, 342, 540
Sau96I	GGNCC	3 cut(s)	95, 427, 620
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	2 cut(s)	210, 618
ScrFI	CCNGG	2 cut(s)	373, 614
SduI	GDGCHC	2 cut(s)	333, 586
SinI	GGWCC	2 cut(s)	95, 427
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
Sse9I	AATT	3 cut(s)	177, 288, 513
SsiI	CCGC	3 cut(s)	64, 183, 376
SspMI	CTAG	2 cut(s)	210, 311
StyD4I	CCNGG	2 cut(s)	371, 612
TaaI	ACNGT	2 cut(s)	154, 563
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	4 cut(s)	20, 146, 165, 363
TasI	AATT	3 cut(s)	177, 288, 513
TatI	WGTACW	2 cut(s)	149, 534
TfiI	GAWTC	2 cut(s)	49, 167
TscAI	CASTG	3 cut(s)	177, 310, 568
TseI	GCWGC	2 cut(s)	263, 442
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	3 cut(s)	177, 310, 568
VpaK11BI	GGWCC	2 cut(s)	95, 427
XapI	RAATTY	2 cut(s)	288, 513
XspI	CTAG	2 cut(s)	210, 311
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.