Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001474.1

Orthogroup ID

OG0003635

Physical Location & Seq

Genomic Coordinates Reverse (-)

7288 .. 16330

Gene Structure 9043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001474.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgaggtattttgacggatcagttgaaactattagctcgccacctccagcagcagaagcaccagttcccatcactcagaatgaggttgaagacacaactgcccctcctgccatcgcttctacccctgacccacagcttcctggtactgaagatcacccatttgaggtactgttgcaagcttcgattcactgccaaattaccgcacacagagacggaagagtcatgtctagtagtaaagctgaagaacctgtaaatgagcaagcagttgcaaataagtttgctgccatgaggtctgaactcaaccaaatttactctaaaatcactgagctagagatggacgtgagtgagcactcattggtgatcaatgccatccagccactcgacccatccaggcggtgcttccgaatgattggaggtgtgctggtggagagaaccatcaaggaggtcctgcctgctgtgcagcgtaacaaagaagggattgaggaggttattactcggctgaatgaggctttggaaaggaagaaaaaagaaatttctgactttgaggccaagtacaagatccggataagaaagaacgacagtgaggagaaggatgatggtgctcgcaaagaaggaactgctcaaggagtcctggtcggccctgctggtggaagcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

219

Amino Acids

24.12

Weight (kDa)

5.06

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22480 AT3G22480
fragaria_vesca	FvH4_4g15650
malus_domestica	MD16G1194400.v1.1
prunus_persica	Prupe.1G014300_v2.0.a1 Prupe.1G014300_v2.0.a1
pyrus_communis	pycom13g16600 pycom16g16420
rosa_chinensis	RchiOBHm_Chr1g0362551 RchiOBHm_Chr4g0387021 RchiOBHm_Chr4g0416141
rosa_laevigata	RLG00000008012 RLG00000010149 RLG00000010151
rosa_multiflora	Rmu_sc0000750.1_g000017 Rmu_sc0001474.1_g000002 Rmu_sc0005725.1_g000004 Rmu_sc0015670.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293990 Rroxscaffold_5G00360000
rosa_rugosa	Rorug01G0298800 Rorug01G0298900 Rorug04G0139100
rosa_samantha	Rh1AG308100 Rh1BG270500 Rh1CG289000 Rh1DG300700 Rh4AG014200 Rh4AG201300 Rh4BG198500 Rh4CG212500 Rh4DG198700
rosa_wichuraiana	Rw1G004170 Rw1G027340 Rw4G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	2 cut(s)	201, 394
AclWI	GGATC	2 cut(s)	25, 553
AcsI	RAATTY	2 cut(s)	306, 531
AcuI	CTGAAG	2 cut(s)	168, 261
AfaI	GTAC	3 cut(s)	145, 168, 554
AfiI	CCNNNNNNNGG	2 cut(s)	163, 647
AgsI	TTSAA	2 cut(s)	26, 89
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	3 cut(s)	139, 389, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	5 cut(s)	36, 136, 179, 239, 328
AluI	AGCT	5 cut(s)	36, 136, 179, 239, 328
Alw21I	GWGCWC	2 cut(s)	351, 604
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	25, 553
Aor13HI	TCCGGA	1 cut(s)	561
AoxI	GGCC	2 cut(s)	546, 637
ApeKI	GCWGC	3 cut(s)	50, 281, 460
ApoI	RAATTY	2 cut(s)	306, 531
AspS9I	GGNCC	2 cut(s)	445, 638
AsuHPI	GGTGA	2 cut(s)	146, 370
AvaII	GGWCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	351, 604
BbvI	GCAGC	3 cut(s)	62, 268, 472
BccI	CCATC	7 cut(s)	77, 119, 328, 377, 394, 443, 590
BciT130I	CCWGG	3 cut(s)	141, 391, 632
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	2 cut(s)	228, 329
BisI	GCNGC	3 cut(s)	51, 282, 461
BlsI	GCNGC	3 cut(s)	52, 283, 462
Bme1390I	CCNGG	3 cut(s)	141, 391, 632
Bme18I	GGWCC	1 cut(s)	445
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	445, 638
BmrFI	CCNGG	3 cut(s)	141, 391, 632
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	606
BsaWI	WCCGGW	1 cut(s)	561
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 647
Bse1I	ACTGG	1 cut(s)	62
BseAI	TCCGGA	1 cut(s)	561
BseBI	CCWGG	3 cut(s)	141, 391, 632
BseGI	GGATG	3 cut(s)	369, 386, 598
BseLI	CCNNNNNNNGG	2 cut(s)	163, 647
BseMII	CTCAG	2 cut(s)	89, 315
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	497, 599
BseXI	GCAGC	3 cut(s)	62, 268, 472
BsgI	GTGCAG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	548, 639
BsiHKAI	GWGCWC	2 cut(s)	351, 604
BsiSI	CCGG	1 cut(s)	562
BslI	CCNNNNNNNGG	2 cut(s)	163, 647
BsmAI	GTCTC	1 cut(s)	204
BsmBI	CGTCTC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	548, 639
Bsp1286I	GDGCHC	2 cut(s)	351, 604
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	17, 151, 360, 558
BspACI	CCGC	2 cut(s)	201, 394
BspANI	GGCC	2 cut(s)	548, 639
BspCNI	CTCAG	2 cut(s)	88, 316
BspEI	TCCGGA	1 cut(s)	561
BspPI	GGATC	2 cut(s)	25, 553
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	4 cut(s)	17, 151, 360, 558
Bst2UI	CCWGG	3 cut(s)	141, 391, 632
Bst4CI	ACNGT	2 cut(s)	171, 581
Bst6I	CTCTTC	1 cut(s)	211
BstC8I	GCNNGC	5 cut(s)	38, 177, 261, 453, 604
BstDEI	CTNAG	2 cut(s)	75, 324
BstF5I	GGATG	3 cut(s)	369, 386, 598
BstKTI	GATC	4 cut(s)	20, 154, 363, 561
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	4 cut(s)	17, 151, 360, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 107, 457
BstNI	CCWGG	3 cut(s)	141, 391, 632
BstSCI	CCNGG	3 cut(s)	139, 389, 630
BstV1I	GCAGC	3 cut(s)	62, 268, 472
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	548, 639
BtgZI	GCGATG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	369, 386, 598
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	187, 321, 586
Cac8I	GCNNGC	5 cut(s)	38, 177, 261, 453, 604
Cfr13I	GGNCC	2 cut(s)	445, 638
Csp6I	GTAC	3 cut(s)	144, 167, 553
CviAII	CATG	2 cut(s)	223, 286
CviQI	GTAC	3 cut(s)	144, 167, 553
DdeI	CTNAG	2 cut(s)	75, 324
DpnI	GATC	4 cut(s)	19, 153, 362, 560
DpnII	GATC	4 cut(s)	17, 151, 360, 558
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	168, 261
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	3 cut(s)	139, 389, 630
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	226, 289
FaiI	YATR	2 cut(s)	224, 287
FatI	CATG	2 cut(s)	222, 285
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	51, 282, 461
FokI	GGATG	3 cut(s)	356, 373, 605
Fsp4HI	GCNGC	3 cut(s)	51, 282, 461
FspBI	CTAG	2 cut(s)	228, 329
GluI	GCNGC	3 cut(s)	51, 282, 461
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	548, 639
HapII	CCGG	1 cut(s)	562
Hin1II	CATG	2 cut(s)	226, 289
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	3 cut(s)	184, 219, 627
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	2 cut(s)	146, 370
Hpy188I	TCNGA	4 cut(s)	78, 295, 404, 538
Hpy188III	TCNNGA	1 cut(s)	562
HpyAV	CCTTC	3 cut(s)	467, 583, 605
HpyCH4III	ACNGT	2 cut(s)	171, 581
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	175, 269, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 107, 457
HpyF3I	CTNAG	2 cut(s)	75, 324
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	226, 289
Kpn2I	TCCGGA	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	17, 151, 360, 558
Lsp1109I	GCAGC	3 cut(s)	62, 268, 472
MaeI	CTAG	2 cut(s)	228, 329
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	4 cut(s)	19, 153, 362, 560
MboI	GATC	4 cut(s)	17, 151, 360, 558
MboII	GAAGA	5 cut(s)	101, 161, 228, 254, 532
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	351, 604
MluCI	AATT	3 cut(s)	195, 306, 531
MlyI	GAGTC	2 cut(s)	228, 636
MroI	TCCGGA	1 cut(s)	561
MspI	CCGG	1 cut(s)	562
MspR9I	CCNGG	3 cut(s)	141, 391, 632
MvaI	CCWGG	3 cut(s)	141, 391, 632
MwoI	GCNNNNNNNGC	3 cut(s)	56, 107, 457
NdeII	GATC	4 cut(s)	17, 151, 360, 558
NlaIII	CATG	2 cut(s)	226, 289
NmeAIII	GCCGAG	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	52, 283, 462
PleI	GAGTC	2 cut(s)	227, 635
PpsI	GAGTC	2 cut(s)	227, 635
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	3 cut(s)	139, 389, 630
PspGI	CCWGG	3 cut(s)	139, 389, 630
PspPI	GGNCC	2 cut(s)	445, 638
PspPPI	RGGWCCY	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	558
RsaI	GTAC	3 cut(s)	145, 168, 554
RsaNI	GTAC	3 cut(s)	144, 167, 553
SatI	GCNGC	3 cut(s)	51, 282, 461
Sau3AI	GATC	4 cut(s)	17, 151, 360, 558
Sau96I	GGNCC	2 cut(s)	445, 638
SchI	GAGTC	2 cut(s)	228, 636
ScrFI	CCNGG	3 cut(s)	141, 391, 632
SduI	GDGCHC	2 cut(s)	351, 604
SinI	GGWCC	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	3 cut(s)	195, 306, 531
SsiI	CCGC	2 cut(s)	201, 394
SspMI	CTAG	2 cut(s)	228, 329
StyD4I	CCNGG	3 cut(s)	139, 389, 630
TaaI	ACNGT	2 cut(s)	171, 581
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	182, 381
TasI	AATT	3 cut(s)	195, 306, 531
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	184
TscAI	CASTG	3 cut(s)	194, 328, 586
TseI	GCWGC	3 cut(s)	50, 281, 460
TspGWI	ACGGA	2 cut(s)	30, 228
TspRI	CASTG	3 cut(s)	194, 328, 586
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	2 cut(s)	306, 531
XspI	CTAG	2 cut(s)	228, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.