Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015670.1

Orthogroup ID

OG0003635

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2529

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015670.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

cagcagctcctctcttcccagcctcgtctgccgtcaaaactcaaaccacctaagctcatagatcgatctcttctgtgtcttcaaaaaacccgattccttcgctcctccgccacattcccggaccccagcttcttcaacctcctttcgtacttgccttcaacttggattattcgactactgttgcaagcttcgattcactgccaaattaccgcacacagagacggaagagtcatgtctagtagtaaagctgaagaacctgtaaatgagcaagcagttgcaaataagtttgctgccatgaggtctgaactcaaccaaatttactctaaaatcactgagctagagatggacgtgagtgagcactcattggtgatcaatgccatccagccactcgacccatccaggcggtgcttccgaatgattggaggtgtgctggtggagagaaccatcaaggaggtcctgcctgctgtgcagcgtaacaaagaagggattgaggaggttattactcggctgaatgaggctttggaaaggaagaaaaaagaaatttctgactttgaggccaagtacaagatccggataagaaagaacgacagtgaggagaaggatgatggtgctcgcaaagaaggaactgctcaaggagtcctggtcggccctgctggtggaagcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

222

Amino Acids

25.06

Weight (kDa)

9.26

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22480 AT3G22480
fragaria_vesca	FvH4_4g15650
malus_domestica	MD16G1194400.v1.1
prunus_persica	Prupe.1G014300_v2.0.a1 Prupe.1G014300_v2.0.a1
pyrus_communis	pycom13g16600 pycom16g16420
rosa_chinensis	RchiOBHm_Chr1g0362551 RchiOBHm_Chr4g0387021 RchiOBHm_Chr4g0416141
rosa_laevigata	RLG00000008012 RLG00000010149 RLG00000010151
rosa_multiflora	Rmu_sc0000750.1_g000017 Rmu_sc0001474.1_g000002 Rmu_sc0005725.1_g000004 Rmu_sc0015670.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293990 Rroxscaffold_5G00360000
rosa_rugosa	Rorug01G0298800 Rorug01G0298900 Rorug04G0139100
rosa_samantha	Rh1AG308100 Rh1BG270500 Rh1CG289000 Rh1DG300700 Rh4AG014200 Rh4AG201300 Rh4BG198500 Rh4CG212500 Rh4DG198700
rosa_wichuraiana	Rw1G004170 Rw1G027340 Rw4G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccIII	TCCGGA	1 cut(s)	570
AciI	CCGC	3 cut(s)	108, 210, 403
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	315, 540
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	149, 563
AfiI	CCNNNNNNNGG	1 cut(s)	656
AgsI	TTSAA	3 cut(s)	83, 136, 159
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	398, 639
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	6 cut(s)	7, 55, 129, 188, 248, 337
AluI	AGCT	6 cut(s)	7, 55, 129, 188, 248, 337
Alw21I	GWGCWC	2 cut(s)	360, 613
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	562
Aor13HI	TCCGGA	1 cut(s)	570
AoxI	GGCC	2 cut(s)	555, 646
ApeKI	GCWGC	3 cut(s)	4, 290, 469
ApoI	RAATTY	2 cut(s)	315, 540
AspS9I	GGNCC	3 cut(s)	121, 454, 647
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	121, 454
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	360, 613
BbvI	GCAGC	3 cut(s)	16, 277, 481
BccI	CCATC	5 cut(s)	337, 386, 403, 452, 599
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	400, 641
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	237, 338
BisI	GCNGC	3 cut(s)	5, 291, 470
BlsI	GCNGC	3 cut(s)	6, 292, 471
Bme1390I	CCNGG	3 cut(s)	119, 400, 641
Bme18I	GGWCC	2 cut(s)	121, 454
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	3 cut(s)	121, 454, 647
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	3 cut(s)	119, 400, 641
BpiI	GAAGAC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
BseAI	TCCGGA	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	400, 641
BseCI	ATCGAT	1 cut(s)	64
BseGI	GGATG	3 cut(s)	378, 395, 607
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	3 cut(s)	94, 506, 608
BseXI	GCAGC	3 cut(s)	16, 277, 481
BseYI	CCCAGC	2 cut(s)	18, 125
BsgI	GTGCAG	1 cut(s)	488
BshFI	GGCC	2 cut(s)	557, 648
BshVI	ATCGAT	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	360, 613
BsiSI	CCGG	2 cut(s)	119, 571
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	557, 648
Bsp1286I	GDGCHC	2 cut(s)	360, 613
Bsp13I	TCCGGA	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	61, 65, 369, 567
BspACI	CCGC	3 cut(s)	108, 210, 403
BspANI	GGCC	2 cut(s)	557, 648
BspCNI	CTCAG	1 cut(s)	325
BspDI	ATCGAT	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	562
BssMI	GATC	4 cut(s)	61, 65, 369, 567
Bst2UI	CCWGG	2 cut(s)	400, 641
Bst4CI	ACNGT	2 cut(s)	180, 590
Bst6I	CTCTTC	3 cut(s)	19, 75, 220
BstC8I	GCNNGC	4 cut(s)	186, 270, 462, 613
BstDEI	CTNAG	2 cut(s)	51, 333
BstF5I	GGATG	3 cut(s)	378, 395, 607
BstKTI	GATC	4 cut(s)	64, 68, 372, 570
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	4 cut(s)	61, 65, 369, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 466
BstNI	CCWGG	2 cut(s)	400, 641
BstSCI	CCNGG	3 cut(s)	117, 398, 639
BstV1I	GCAGC	3 cut(s)	16, 277, 481
BstV2I	GAAGAC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
Bsu15I	ATCGAT	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	557, 648
BsuTUI	ATCGAT	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	3 cut(s)	378, 395, 607
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	196, 330, 595
Cac8I	GCNNGC	4 cut(s)	186, 270, 462, 613
Cfr13I	GGNCC	3 cut(s)	121, 454, 647
ClaI	ATCGAT	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	148, 562
CviAII	CATG	2 cut(s)	232, 295
CviQI	GTAC	2 cut(s)	148, 562
DdeI	CTNAG	2 cut(s)	51, 333
DpnI	GATC	4 cut(s)	63, 67, 371, 569
DpnII	GATC	4 cut(s)	61, 65, 369, 567
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	19, 75, 220
EarI	CTCTTC	3 cut(s)	19, 75, 220
EciI	GGCGGA	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	121, 454
Eco57I	CTGAAG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	398, 639
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	2 cut(s)	235, 298
FaiI	YATR	3 cut(s)	59, 233, 296
FatI	CATG	2 cut(s)	231, 294
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	5, 291, 470
FokI	GGATG	3 cut(s)	365, 382, 614
Fsp4HI	GCNGC	3 cut(s)	5, 291, 470
FspBI	CTAG	2 cut(s)	237, 338
GluI	GCNGC	3 cut(s)	5, 291, 470
GsaI	CCCAGC	2 cut(s)	22, 129
HaeIII	GGCC	2 cut(s)	557, 648
HapII	CCGG	2 cut(s)	119, 571
Hin1II	CATG	2 cut(s)	235, 298
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	4 cut(s)	93, 193, 228, 636
HpaII	CCGG	2 cut(s)	119, 571
HphI	GGTGA	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	304, 413, 547
Hpy188III	TCNNGA	1 cut(s)	571
HpyAV	CCTTC	5 cut(s)	107, 165, 476, 592, 614
HpyCH4III	ACNGT	2 cut(s)	180, 590
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	184, 278, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 466
HpyF3I	CTNAG	2 cut(s)	51, 333
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	235, 298
Kpn2I	TCCGGA	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	61, 65, 369, 567
LmnI	GCTCC	2 cut(s)	12, 107
Lsp1109I	GCAGC	3 cut(s)	16, 277, 481
MaeI	CTAG	2 cut(s)	237, 338
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	4 cut(s)	63, 67, 371, 569
MboI	GATC	4 cut(s)	61, 65, 369, 567
MboII	GAAGA	7 cut(s)	6, 62, 71, 124, 237, 263, 541
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	2 cut(s)	360, 613
MluCI	AATT	3 cut(s)	204, 315, 540
MlyI	GAGTC	2 cut(s)	237, 645
MroI	TCCGGA	1 cut(s)	570
MspI	CCGG	2 cut(s)	119, 571
MspR9I	CCNGG	3 cut(s)	119, 400, 641
MvaI	CCWGG	2 cut(s)	400, 641
MwoI	GCNNNNNNNGC	2 cut(s)	28, 466
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	61, 65, 369, 567
NlaIII	CATG	2 cut(s)	235, 298
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	93, 193
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	6, 292, 471
PleI	GAGTC	2 cut(s)	236, 644
PpsI	GAGTC	2 cut(s)	236, 644
PpuMI	RGGWCCY	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	398, 639
PspFI	CCCAGC	2 cut(s)	18, 125
PspGI	CCWGG	2 cut(s)	398, 639
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	3 cut(s)	121, 454, 647
PspPPI	RGGWCCY	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	567
RsaI	GTAC	2 cut(s)	149, 563
RsaNI	GTAC	2 cut(s)	148, 562
SatI	GCNGC	3 cut(s)	5, 291, 470
Sau3AI	GATC	4 cut(s)	61, 65, 369, 567
Sau96I	GGNCC	3 cut(s)	121, 454, 647
SchI	GAGTC	2 cut(s)	237, 645
ScrFI	CCNGG	3 cut(s)	119, 400, 641
SduI	GDGCHC	2 cut(s)	360, 613
SinI	GGWCC	2 cut(s)	121, 454
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
Sse9I	AATT	3 cut(s)	204, 315, 540
SsiI	CCGC	3 cut(s)	108, 210, 403
SspMI	CTAG	2 cut(s)	237, 338
StyD4I	CCNGG	3 cut(s)	117, 398, 639
TaaI	ACNGT	2 cut(s)	180, 590
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	4 cut(s)	64, 172, 191, 390
TasI	AATT	3 cut(s)	204, 315, 540
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	93, 193
TscAI	CASTG	3 cut(s)	203, 337, 595
TseI	GCWGC	3 cut(s)	4, 290, 469
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	3 cut(s)	203, 337, 595
VpaK11BI	GGWCC	2 cut(s)	121, 454
XapI	RAATTY	2 cut(s)	315, 540
XspI	CTAG	2 cut(s)	237, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.