Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003635

Physical Location & Seq

Genomic Coordinates Forward (+)

12390036 .. 12390718

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGAACCATGGCCACTAGTAAAGCTGAAGATCAGAAGGAATATGTAAATGAACAAGCAGTTGCAAATAAGTTTGCTGCTATGAGGTCTGAACTCAACCAAATTTACTCGAAAATCACTGAGCTAGAGATGGAAGCGAGCGAGCACTTGTTGGTCATCAATGCCATCCAGCCACTCGATCCATCCAGGCGATGCTACCGGATGATCGGAGGTGTTCTGGTGGAGAGAACCATCAAGGAGGTTCTGCCTGCTGTGCAGCGCAACAAAGAGGGGATTGAGGAGGTTATAGCTAGGCTGAATGAGGCATTGGAAAAGAAGAAAAAGGAAATCTCTGATTTTGAGGCTAAGTACAAGATCAGGATACGGAAGGAGCAGGGTGAGGAGAAGGATGATAGCGCTCGGAAAGAAGGGACTGCTCAAGGAGTCCTGGTCGGCCCTGCTGGCGGAAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

152

Amino Acids

17.04

Weight (kDa)

6.05

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22480 AT3G22480
fragaria_vesca	FvH4_4g15650
malus_domestica	MD16G1194400.v1.1
prunus_persica	Prupe.1G014300_v2.0.a1 Prupe.1G014300_v2.0.a1
pyrus_communis	pycom13g16600 pycom16g16420
rosa_chinensis	RchiOBHm_Chr1g0362551 RchiOBHm_Chr4g0387021 RchiOBHm_Chr4g0416141
rosa_laevigata	RLG00000008012 RLG00000010149 RLG00000010151
rosa_multiflora	Rmu_sc0000750.1_g000017 Rmu_sc0001474.1_g000002 Rmu_sc0005725.1_g000004 Rmu_sc0015670.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293990 Rroxscaffold_5G00360000
rosa_rugosa	Rorug01G0298800 Rorug01G0298900 Rorug04G0139100
rosa_samantha	Rh1AG308100 Rh1BG270500 Rh1CG289000 Rh1DG300700 Rh4AG014200 Rh4AG201300 Rh4BG198500 Rh4CG212500 Rh4DG198700
rosa_wichuraiana	Rw1G004170 Rw1G027340 Rw4G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	350
AfeI	AGCGCT	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	443
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	185, 426
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	26, 124, 290
AluI	AGCT	3 cut(s)	26, 124, 290
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	173
Aor51HI	AGCGCT	1 cut(s)	397
AoxI	GGCC	2 cut(s)	12, 433
ApeKI	GCWGC	2 cut(s)	77, 256
ApoI	RAATTY	1 cut(s)	102
AspLEI	GCGC	2 cut(s)	261, 398
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	64, 268
BccI	CCATC	4 cut(s)	124, 173, 190, 239
BciT130I	CCWGG	2 cut(s)	187, 428
BciVI	GTATCC	1 cut(s)	354
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	3 cut(s)	18, 125, 291
BfoI	RGCGCY	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	441
BisI	GCNGC	2 cut(s)	78, 257
BlsI	GCNGC	2 cut(s)	79, 258
Bme1390I	CCNGG	2 cut(s)	187, 428
BmgT120I	GGNCC	1 cut(s)	434
BmrFI	CCNGG	2 cut(s)	187, 428
BmsI	GCATC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	187, 428
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	4 cut(s)	165, 182, 207, 394
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	293, 395
BseXI	GCAGC	2 cut(s)	64, 268
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	14, 435
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	14, 435
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	31, 178, 204, 354
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	2 cut(s)	14, 435
BspCNI	CTCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	31, 178, 204, 354
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	187, 428
BstC8I	GCNNGC	4 cut(s)	139, 143, 249, 442
BstDEI	CTNAG	2 cut(s)	120, 345
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	165, 182, 207, 394
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	2 cut(s)	261, 398
BstKTI	GATC	4 cut(s)	34, 181, 207, 357
BstMBI	GATC	4 cut(s)	31, 178, 204, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 441
BstNI	CCWGG	2 cut(s)	187, 428
BstSCI	CCNGG	2 cut(s)	185, 426
BstV1I	GCAGC	2 cut(s)	64, 268
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	14, 435
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	4 cut(s)	165, 182, 207, 394
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	4 cut(s)	139, 143, 249, 442
CfoI	GCGC	2 cut(s)	261, 398
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	8 cut(s)	14, 26, 124, 172, 290, 295, 344, 435
CviKI_1	RGCY	8 cut(s)	14, 26, 124, 172, 290, 295, 344, 435
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	120, 345
DpnI	GATC	4 cut(s)	33, 180, 206, 356
DpnII	GATC	4 cut(s)	31, 178, 204, 354
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	9
Eco47III	AGCGCT	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	185, 426
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	13
FaiI	YATR	4 cut(s)	11, 45, 83, 287
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	78, 257
FokI	GGATG	4 cut(s)	152, 169, 214, 401
Fsp4HI	GCNGC	2 cut(s)	78, 257
FspBI	CTAG	3 cut(s)	18, 125, 291
GlaI	GCGC	2 cut(s)	260, 397
GluI	GCNGC	2 cut(s)	78, 257
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	14, 435
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	2 cut(s)	261, 398
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	2 cut(s)	259, 396
HinP1I	GCGC	2 cut(s)	259, 396
HinfI	GANTC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	5 cut(s)	36, 91, 209, 334, 402
Hpy188III	TCNNGA	1 cut(s)	358
HpyAV	CCTTC	4 cut(s)	31, 361, 379, 401
HpyCH4V	TGCA	2 cut(s)	65, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 441
HpyF3I	CTNAG	2 cut(s)	120, 345
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	2 cut(s)	259, 396
Kzo9I	GATC	4 cut(s)	31, 178, 204, 354
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	2 cut(s)	64, 268
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	3 cut(s)	18, 125, 291
MalI	GATC	4 cut(s)	33, 180, 206, 356
MboI	GATC	4 cut(s)	31, 178, 204, 354
MboII	GAAGA	2 cut(s)	41, 328
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	9 cut(s)	78, 203, 232, 262, 271, 274, 295, 334, 373
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	2 cut(s)	187, 428
MvaI	CCWGG	2 cut(s)	187, 428
MwoI	GCNNNNNNNGC	2 cut(s)	253, 441
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	31, 178, 204, 354
NlaIII	CATG	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	79, 258
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	185, 426
PspGI	CCWGG	2 cut(s)	185, 426
PspPI	GGNCC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SatI	GCNGC	2 cut(s)	78, 257
Sau3AI	GATC	4 cut(s)	31, 178, 204, 354
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	187, 428
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	7 cut(s)	28, 89, 126, 214, 243, 285, 292
SfaNI	GCATC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	1 cut(s)	102
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	3 cut(s)	18, 125, 291
StyD4I	CCNGG	2 cut(s)	185, 426
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	2 cut(s)	110, 177
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	348
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	2 cut(s)	77, 256
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	3 cut(s)	18, 125, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.