Rh1BG270500

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003635
Physical Location & Seq
Reverse (-)
40511768 .. 40512022
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG270500.1

Sequence Viewer

Length: 255 bp
ATGATTGGAGGTGTGCTGGTGGAGAGAACCATCAAGGAGGTCCTGCCTGCTGTGCAGCGTAACAAAGAAGGGATTGAGGAGGTTATTACTCGGCTGAATGAGGCTTTGGAAAGGAAGAAAAAAGAAATTTCTGACTTTGAGGCCAAGTACAAGATCCGGATAAGAAAGAATGACAGTGAGGAGAAGGATGATGGTGCTCGCAAAGAAGGAACTGCTCAAGGAGTCCTGGTCGGCCCTGCTGGTGGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

84

Amino Acids

9.32

Weight (kDa)

6.38

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 1 - 56 1.3e-10 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 156
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 242
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
Alw21I GWGCWC 1 cut(s) 199
AlwI GGATC 1 cut(s) 148
Aor13HI TCCGGA 1 cut(s) 156
AoxI GGCC 2 cut(s) 141, 232
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 40, 233
AvaII GGWCC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 38, 185
BciT130I CCWGG 1 cut(s) 227
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 40, 233
BmrFI CCNGG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 242
BseRI GAGGAG 2 cut(s) 92, 194
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 2 cut(s) 143, 234
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 242
BsnI GGCC 2 cut(s) 143, 234
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 2 cut(s) 143, 234
BspEI TCCGGA 1 cut(s) 156
BspPI GGATC 1 cut(s) 148
BssMI GATC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 48, 199
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 143, 234
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 48, 199
Cfr13I GGNCC 2 cut(s) 40, 233
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 4 cut(s) 94, 104, 143, 234
CviKI_1 RGCY 4 cut(s) 94, 104, 143, 234
CviQI GTAC 1 cut(s) 148
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 2 cut(s) 143, 234
HapII CCGG 1 cut(s) 157
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 62, 178, 200
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
Kpn2I TCCGGA 1 cut(s) 156
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 8 cut(s) 2, 56, 60, 170, 212, 225, 239, 249
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 127
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 126
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 6 cut(s) 31, 70, 73, 94, 133, 172
MroI TCCGGA 1 cut(s) 156
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 70
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspPI GGNCC 2 cut(s) 40, 233
PspPPI RGGWCCY 1 cut(s) 40
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 2 cut(s) 40, 233
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 199
SetI ASST 3 cut(s) 13, 42, 84
SinI GGWCC 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 176
TasI AATT 1 cut(s) 126
TatI WGTACW 1 cut(s) 147
TscAI CASTG 1 cut(s) 181
TseI GCWGC 1 cut(s) 55
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.