Rw1G027340

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003635
Physical Location & Seq
Reverse (-)
54836887 .. 54837321
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027340.1

Sequence Viewer

Length: 435 bp
ATGTCTAGTAGTAAAGCTGAAGAACCTGTAAATGAGCAAGCAGTTGCAAATAAGTTTGCTGCCATGAGGTCTGAACTCAACCAAATTTACTCTAAAATCACTGAGCTAGAGATGGACGTGAGTGAGCACTCATTGGTGATCAATGCCATCCAGCCACTCGACCCATCTAGGCGGTGCTTCCGAATGATTGGGGTGTGCTGGTGGAGAAACCATCAAGGAGGTCCTGCTGCTGTGCAGCGTAACAAAGAAGGGATTGAGGAGGTTATTACTCGGCTGAATGAGGCTTTGGAAAGGAAGAAAAAAGAAATTTCTGACTTCGAGGCCAAGTACAAGATCCGGATAAGAAAGAACGACAGTGAGGAGAAGGATGATGGTGCTCGCAAAGAAGGAACTGCTCAAGGAGTCCTGGTCGGCCCTGCTGGTGGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

144

Amino Acids

16.17

Weight (kDa)

6.2

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 13 - 116 3e-17 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 336
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 84, 306
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 422
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 2 cut(s) 17, 106
AluI AGCT 2 cut(s) 17, 106
Alw21I GWGCWC 2 cut(s) 129, 379
AlwI GGATC 1 cut(s) 328
Aor13HI TCCGGA 1 cut(s) 336
AoxI GGCC 2 cut(s) 321, 412
ApeKI GCWGC 3 cut(s) 59, 227, 235
ApoI RAATTY 2 cut(s) 84, 306
AspS9I GGNCC 2 cut(s) 221, 413
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 129, 379
BbvI GCAGC 3 cut(s) 46, 214, 247
BccI CCATC 5 cut(s) 106, 155, 172, 219, 365
BciT130I CCWGG 1 cut(s) 407
BclI TGATCA 1 cut(s) 138
BfaI CTAG 3 cut(s) 6, 107, 168
BisI GCNGC 3 cut(s) 60, 228, 236
BlsI GCNGC 3 cut(s) 61, 229, 237
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 221, 413
BmrFI CCNGG 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 422
BseAI TCCGGA 1 cut(s) 336
BseBI CCWGG 1 cut(s) 407
BseGI GGATG 2 cut(s) 147, 373
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 272, 374
BseXI GCAGC 3 cut(s) 46, 214, 247
BsgI GTGCAG 1 cut(s) 254
BshFI GGCC 2 cut(s) 323, 414
BsiHKAI GWGCWC 2 cut(s) 129, 379
BsiSI CCGG 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 422
BsnI GGCC 2 cut(s) 323, 414
Bsp1286I GDGCHC 2 cut(s) 129, 379
Bsp13I TCCGGA 1 cut(s) 336
Bsp143I GATC 2 cut(s) 138, 333
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 323, 414
BspCNI CTCAG 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 336
BspPI GGATC 1 cut(s) 328
BssMI GATC 2 cut(s) 138, 333
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 39, 379
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 147, 373
BstKTI GATC 2 cut(s) 141, 336
BstMBI GATC 2 cut(s) 138, 333
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 46, 214, 247
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuRI GGCC 2 cut(s) 323, 414
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 147, 373
BtsIMutI CAGTG 2 cut(s) 99, 361
Cac8I GCNNGC 2 cut(s) 39, 379
Cfr13I GGNCC 2 cut(s) 221, 413
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 17, 106, 154, 274, 284, 323, 414
CviKI_1 RGCY 7 cut(s) 17, 106, 154, 274, 284, 323, 414
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 140, 335
DpnII GATC 2 cut(s) 138, 333
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 60, 228, 236
FokI GGATG 2 cut(s) 134, 380
Fsp4HI GCNGC 3 cut(s) 60, 228, 236
FspBI CTAG 3 cut(s) 6, 107, 168
GluI GCNGC 3 cut(s) 60, 228, 236
HaeIII GGCC 2 cut(s) 323, 414
HapII CCGG 1 cut(s) 337
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 402
HpaII CCGG 1 cut(s) 337
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 73, 182, 313
Hpy188III TCNNGA 1 cut(s) 337
HpyAV CCTTC 3 cut(s) 242, 358, 380
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 47, 235
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 333
LpnPI CCDG 9 cut(s) 39, 164, 184, 237, 350, 392, 405, 419, 429
Lsp1109I GCAGC 3 cut(s) 46, 214, 247
MaeI CTAG 3 cut(s) 6, 107, 168
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 140, 335
MboI GATC 2 cut(s) 138, 333
MboII GAAGA 2 cut(s) 32, 307
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 129, 379
MluCI AATT 2 cut(s) 84, 306
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 7 cut(s) 60, 212, 250, 253, 274, 313, 352
MroI TCCGGA 1 cut(s) 336
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
NdeII GATC 2 cut(s) 138, 333
NlaIII CATG 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 250
PkrI GCNGC 3 cut(s) 61, 229, 237
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspPI GGNCC 2 cut(s) 221, 413
PspPPI RGGWCCY 1 cut(s) 221
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SatI GCNGC 3 cut(s) 60, 228, 236
Sau3AI GATC 2 cut(s) 138, 333
Sau96I GGNCC 2 cut(s) 221, 413
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 2 cut(s) 129, 379
SetI ASST 7 cut(s) 19, 28, 71, 108, 120, 223, 264
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 2 cut(s) 84, 306
SsiI CCGC 1 cut(s) 172
SspMI CTAG 3 cut(s) 6, 107, 168
StyD4I CCNGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 159, 318
TasI AATT 2 cut(s) 84, 306
TatI WGTACW 1 cut(s) 327
TscAI CASTG 2 cut(s) 106, 361
TseI GCWGC 3 cut(s) 59, 227, 235
TspRI CASTG 2 cut(s) 106, 361
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 2 cut(s) 84, 306
XspI CTAG 3 cut(s) 6, 107, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.