RLG00000010149

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003635
Physical Location & Seq
Forward (+)
63520129 .. 63521038
910 bp
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UTR
Exon/CDS
Intron
RLM00000010149

Sequence Viewer

Length: 552 bp
ATGTCTAGTAGTAAAGCTGAAGAACCTGTAAATGAGCAAGCAGTTGCAAATAAGTTTGCTGCCATGAGGTCTGAACTCAACCAAATTTACTCTAAAATCACTGAGCTAGAGATGGACGTGAGTGAGCACTCATTGGTGATCAATGCTATCCAGCCACTCGACCCATCCAGGCGGTGCTTCCGAATGATTGGAGGTGTGTTGGTGGAGAGAACCATCAAGGAGGTCCTGCCTGCTGTGCAGCGTAACAAAGAAGGCATTGAGGAGGTTATTACTCGGCTGAATGAGGCTTTGGAACGGAAGAAAAAAGAAATTTCTGACTTTGAGGCCAAGTACAAGATCCGGATAAGAAAGAACGACAGTGAGGAGAAGGATGATGGTGCTCGCAAAGAAGGAACTGCTCAAGGAGTCCTGGTCGGCCCTGCTGTAGAAAAACTCCTGAACCCTCTGCCGGTGAAAACCCAGTACTCCGCCAAAACGGCAAGGGTGACATTATCGGGACCTGGGCGAATATGTGAAGCGCCACGGTCACAGACTCGGTTGTGGTACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

184

Amino Acids

20.6

Weight (kDa)

8.94

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 13 - 117 3.2e-26 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 2 cut(s) 172, 468
AclWI GGATC 1 cut(s) 331
AcsI RAATTY 2 cut(s) 84, 309
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 3 cut(s) 332, 464, 545
AfiI CCNNNNNNNGG 1 cut(s) 448
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 3 cut(s) 167, 408, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 2 cut(s) 17, 106
AluI AGCT 2 cut(s) 17, 106
Alw21I GWGCWC 2 cut(s) 129, 382
AlwI GGATC 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 2 cut(s) 324, 415
ApeKI GCWGC 2 cut(s) 59, 238
ApoI RAATTY 2 cut(s) 84, 309
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 3 cut(s) 223, 416, 497
AsuHPI GGTGA 3 cut(s) 148, 463, 496
AvaII GGWCC 2 cut(s) 223, 497
Bbv12I GWGCWC 2 cut(s) 129, 382
BbvI GCAGC 2 cut(s) 46, 250
BccI CCATC 4 cut(s) 106, 172, 221, 368
BceAI ACGGC 1 cut(s) 492
BciT130I CCWGG 3 cut(s) 169, 410, 501
BclI TGATCA 1 cut(s) 138
BfaI CTAG 2 cut(s) 6, 107
BfmI CTRYAG 1 cut(s) 423
BfoI RGCGCY 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 2 cut(s) 60, 239
BlsI GCNGC 2 cut(s) 61, 240
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 169, 410, 501
Bme18I GGWCC 2 cut(s) 223, 497
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 3 cut(s) 223, 416, 497
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 169, 410, 501
BmrI ACTGGG 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 500, 521
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 460
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 3 cut(s) 169, 410, 501
BseDI CCNNGG 2 cut(s) 500, 521
BseGI GGATG 2 cut(s) 164, 376
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 2 cut(s) 275, 377
BseXI GCAGC 2 cut(s) 46, 250
BsgI GTGCAG 1 cut(s) 257
BshFI GGCC 2 cut(s) 326, 417
BsiHKAI GWGCWC 2 cut(s) 129, 382
BsiSI CCGG 2 cut(s) 340, 449
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 2 cut(s) 326, 417
Bsp1286I GDGCHC 2 cut(s) 129, 382
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 138, 336
BspACI CCGC 2 cut(s) 172, 468
BspANI GGCC 2 cut(s) 326, 417
BspCNI CTCAG 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 500, 521
BssMI GATC 2 cut(s) 138, 336
Bst2UI CCWGG 3 cut(s) 169, 410, 501
Bst4CI ACNGT 2 cut(s) 359, 525
BstC8I GCNNGC 3 cut(s) 39, 231, 382
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 164, 376
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 2 cut(s) 141, 339
BstMBI GATC 2 cut(s) 138, 336
BstMWI GCNNNNNNNGC 2 cut(s) 235, 476
BstNI CCWGG 3 cut(s) 169, 410, 501
BstSCI CCNGG 3 cut(s) 167, 408, 499
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 46, 250
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BsuRI GGCC 2 cut(s) 326, 417
BtgI CCRYGG 1 cut(s) 521
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 164, 376
BtsIMutI CAGTG 2 cut(s) 99, 364
Cac8I GCNNGC 3 cut(s) 39, 231, 382
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 3 cut(s) 223, 416, 497
Csp6I GTAC 3 cut(s) 331, 463, 544
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 17, 106, 154, 277, 287, 326, 417
CviKI_1 RGCY 7 cut(s) 17, 106, 154, 277, 287, 326, 417
CviQI GTAC 3 cut(s) 331, 463, 544
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 140, 338
DpnII GATC 2 cut(s) 138, 336
EciI GGCGGA 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 223, 497
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 2 cut(s) 223, 497
EcoRII CCWGG 3 cut(s) 167, 408, 499
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 511
FaqI GGGAC 1 cut(s) 510
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 60, 239
FokI GGATG 2 cut(s) 151, 383
Fsp4HI GCNGC 2 cut(s) 60, 239
FspBI CTAG 2 cut(s) 6, 107
GlaI GCGC 1 cut(s) 519
GluI GCNGC 2 cut(s) 60, 239
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 2 cut(s) 326, 417
HapII CCGG 2 cut(s) 340, 449
HhaI GCGC 1 cut(s) 520
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HinfI GANTC 2 cut(s) 405, 532
HpaII CCGG 2 cut(s) 340, 449
HphI GGTGA 3 cut(s) 148, 463, 496
Hpy188I TCNGA 3 cut(s) 73, 182, 316
Hpy188III TCNNGA 3 cut(s) 340, 436, 495
HpyAV CCTTC 3 cut(s) 245, 361, 383
HpyCH4III ACNGT 2 cut(s) 359, 525
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 47, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 476
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 518
Kpn2I TCCGGA 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 336
Lsp1109I GCAGC 2 cut(s) 46, 250
MaeI CTAG 2 cut(s) 6, 107
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 3 cut(s) 242, 484, 525
MalI GATC 2 cut(s) 140, 338
MboI GATC 2 cut(s) 138, 336
MboII GAAGA 2 cut(s) 32, 310
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 129, 382
MluCI AATT 2 cut(s) 84, 309
MlyI GAGTC 2 cut(s) 414, 526
MnlI CCTC 9 cut(s) 60, 185, 214, 253, 256, 277, 316, 355, 453
MroI TCCGGA 1 cut(s) 339
MspI CCGG 2 cut(s) 340, 449
MspR9I CCNGG 3 cut(s) 169, 410, 501
MvaI CCWGG 3 cut(s) 169, 410, 501
MwoI GCNNNNNNNGC 2 cut(s) 235, 476
NdeII GATC 2 cut(s) 138, 336
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 498
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 484, 525
PkrI GCNGC 2 cut(s) 61, 240
PleI GAGTC 2 cut(s) 413, 526
PpsI GAGTC 2 cut(s) 413, 526
PpuMI RGGWCCY 2 cut(s) 223, 497
Psp5II RGGWCCY 2 cut(s) 223, 497
Psp6I CCWGG 3 cut(s) 167, 408, 499
PspGI CCWGG 3 cut(s) 167, 408, 499
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 3 cut(s) 223, 416, 497
PspPPI RGGWCCY 2 cut(s) 223, 497
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 3 cut(s) 332, 464, 545
RsaNI GTAC 3 cut(s) 331, 463, 544
SatI GCNGC 2 cut(s) 60, 239
Sau3AI GATC 2 cut(s) 138, 336
Sau96I GGNCC 3 cut(s) 223, 416, 497
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 2 cut(s) 414, 526
ScrFI CCNGG 3 cut(s) 169, 410, 501
SduI GDGCHC 2 cut(s) 129, 382
SetI ASST 9 cut(s) 19, 28, 71, 108, 120, 196, 225, 267, 502
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 2 cut(s) 223, 497
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 2 cut(s) 84, 309
SsiI CCGC 2 cut(s) 172, 468
SspMI CTAG 2 cut(s) 6, 107
StyD4I CCNGG 3 cut(s) 167, 408, 499
TaaI ACNGT 2 cut(s) 359, 525
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 84, 309
TatI WGTACW 2 cut(s) 330, 462
TscAI CASTG 2 cut(s) 106, 364
TseFI GTSAC 2 cut(s) 484, 525
TseI GCWGC 2 cut(s) 59, 238
Tsp45I GTSAC 2 cut(s) 484, 525
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 2 cut(s) 106, 364
VpaK11BI GGWCC 2 cut(s) 223, 497
XapI RAATTY 2 cut(s) 84, 309
XspI CTAG 2 cut(s) 6, 107
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.