Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003635

Physical Location & Seq

Genomic Coordinates Reverse (-)

41546456 .. 41547158

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0298900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCCACTGATAATCATCTTCAATTTCAATGGCAATCCACAGTTTTGAATAATCAACGTGGTCACGTGGAAGTGTACCTCAACGTTGTAATTCCAACTGTATCTGCTTCATCATCTTCTTCTTCTTTTACGACTACTGCTTCACCCACTAACAATCTTGCTTTCATCGTTCCGGTACTCTTAACCTTCGTTCAGATCAAGTTCCCAGGGATCAACATGTGGTCTTCGCTGTTCGAAACGCACCATACAACCACCATGGCCGCCATTGCAAGCTTGCTTCTGTATTGGCTGGCGCTAGAGGCCATGCAGAGATTCCCCGCTTACACTGTCAACTTTCGAGTCGTTAGGACGTTTTCAGGTTTGATCTCAATTGCTTCACTGCTCGCGCTTCTGCTTCCCGACTGTTGGGAGCATGTACCATATTACGTGTTGTTCATGTCATATTGGGTGAGCCGGGGGTTTGGGTTTCTACGAATGATGTATGGAAGGGTTTACCGACGAGTTGTGGAGGAACTTCTTCAAAATATATGGTTAAGCCATTACTGTCAACGAGTCAGAAGAACTAGTGGGCTCTCGCCGTCGACGGTTATGGATACACATGATCGCACTTCGATCTGTGGGCTCTTGCCATTGACGGTGATGGATATGCATGATCGCATGTCGTATTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

224

Amino Acids

25.71

Weight (kDa)

8.84

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22480 AT3G22480
fragaria_vesca	FvH4_4g15650
malus_domestica	MD16G1194400.v1.1
prunus_persica	Prupe.1G014300_v2.0.a1 Prupe.1G014300_v2.0.a1
pyrus_communis	pycom13g16600 pycom16g16420
rosa_chinensis	RchiOBHm_Chr1g0362551 RchiOBHm_Chr4g0387021 RchiOBHm_Chr4g0416141
rosa_laevigata	RLG00000008012 RLG00000010149 RLG00000010151
rosa_multiflora	Rmu_sc0000750.1_g000017 Rmu_sc0001474.1_g000002 Rmu_sc0005725.1_g000004 Rmu_sc0015670.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293990 Rroxscaffold_5G00360000
rosa_rugosa	Rorug01G0298800 Rorug01G0298900 Rorug04G0139100
rosa_samantha	Rh1AG308100 Rh1BG270500 Rh1CG289000 Rh1DG300700 Rh4AG014200 Rh4AG201300 Rh4BG198500 Rh4CG212500 Rh4DG198700
rosa_wichuraiana	Rw1G004170 Rw1G027340 Rw4G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	1 cut(s)	386
AciI	CCGC	2 cut(s)	261, 318
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	2 cut(s)	3, 258
AcvI	CACGTG	1 cut(s)	67
AfaI	GTAC	3 cut(s)	77, 177, 417
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflIII	ACRYGT	2 cut(s)	216, 426
AgsI	TTSAA	4 cut(s)	23, 29, 49, 521
AhlI	ACTAGT	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	3 cut(s)	3, 258, 300
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	295, 388
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	135, 460, 649
AsuII	TTCGAA	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	573, 624
BbrPI	CACGTG	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	216
BccI	CCATC	1 cut(s)	634
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	455
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	2 cut(s)	296, 564
BfoI	RGCGCY	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	207, 455
BmrFI	CCNGG	2 cut(s)	207, 455
BpiI	GAAGAC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	455
BsaAI	YACGTR	2 cut(s)	67, 427
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	205, 206, 255, 454
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	4 cut(s)	205, 206, 255, 454
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	3 cut(s)	5, 260, 302
BsiSI	CCGG	2 cut(s)	173, 454
BslI	CCNNNNNNNGG	1 cut(s)	405
BsnI	GGCC	3 cut(s)	5, 260, 302
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	573, 624
Bsp143I	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	2 cut(s)	261, 318
BspANI	GGCC	3 cut(s)	5, 260, 302
BspFNI	CGCG	1 cut(s)	386
BspPI	GGATC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	4 cut(s)	205, 206, 255, 454
BssMI	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	7 cut(s)	43, 100, 328, 404, 545, 586, 637
BstBAI	YACGTR	2 cut(s)	67, 427
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	4 cut(s)	271, 275, 291, 384
BstDSI	CCRYGG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	386
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	295, 388
BstKTI	GATC	6 cut(s)	198, 213, 366, 604, 615, 655
BstMBI	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 299
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	3 cut(s)	220, 416, 661
BstSCI	CCNGG	2 cut(s)	205, 453
BstUI	CGCG	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	5, 260, 302
BtgI	CCRYGG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	3 cut(s)	6, 324, 377
Cac8I	GCNNGC	4 cut(s)	271, 275, 291, 384
CfoI	GCGC	2 cut(s)	295, 388
Csp6I	GTAC	3 cut(s)	76, 176, 416
CviAII	CATG	8 cut(s)	217, 256, 304, 413, 436, 599, 650, 658
CviJI	RGCY	9 cut(s)	5, 260, 273, 289, 302, 453, 537, 571, 622
CviKI_1	RGCY	9 cut(s)	5, 260, 273, 289, 302, 453, 537, 571, 622
CviQI	GTAC	3 cut(s)	76, 176, 416
DpnI	GATC	6 cut(s)	197, 212, 365, 603, 614, 654
DpnII	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
EaeI	YGGCCR	2 cut(s)	3, 258
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	573, 624
Eco72I	CACGTG	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	573, 624
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	8 cut(s)	220, 259, 307, 416, 439, 602, 653, 661
FatI	CATG	8 cut(s)	216, 255, 303, 412, 435, 598, 649, 657
FauI	CCCGC	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	573, 624
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	296, 564
GlaI	GCGC	2 cut(s)	294, 387
GluI	GCNGC	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	5, 260, 302
HapII	CCGG	2 cut(s)	173, 454
HhaI	GCGC	2 cut(s)	295, 388
Hin1II	CATG	8 cut(s)	220, 259, 307, 416, 439, 602, 653, 661
Hin6I	GCGC	2 cut(s)	293, 386
HinP1I	GCGC	2 cut(s)	293, 386
HincII	GTYRAC	3 cut(s)	331, 548, 582
HindII	GTYRAC	3 cut(s)	331, 548, 582
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	3 cut(s)	312, 339, 552
HpaII	CCGG	2 cut(s)	173, 454
HphI	GGTGA	3 cut(s)	135, 460, 649
Hpy166II	GTNNAC	5 cut(s)	76, 331, 493, 548, 582
Hpy188I	TCNGA	2 cut(s)	195, 557
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	5 cut(s)	76, 331, 493, 548, 582
Hpy99I	CGWCG	3 cut(s)	501, 583, 586
HpyAV	CCTTC	2 cut(s)	196, 480
HpyCH4III	ACNGT	7 cut(s)	43, 100, 328, 404, 545, 586, 637
HpyCH4IV	ACGT	5 cut(s)	58, 66, 84, 350, 426
HpyCH4V	TGCA	3 cut(s)	269, 307, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 299
HpySE526I	ACGT	5 cut(s)	58, 66, 84, 350, 426
Hsp92II	CATG	8 cut(s)	220, 259, 307, 416, 439, 602, 653, 661
HspAI	GCGC	2 cut(s)	293, 386
Kzo9I	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	6 cut(s)	186, 192, 219, 275, 342, 467
MaeI	CTAG	2 cut(s)	296, 564
MaeII	ACGT	5 cut(s)	58, 66, 84, 350, 426
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	6 cut(s)	197, 212, 365, 603, 614, 654
MboI	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
MboII	GAAGA	7 cut(s)	11, 108, 111, 114, 216, 509, 570
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	573, 624
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	23, 90, 369
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	348, 561
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	89, 292, 502
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	182, 533
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	173, 454
MspR9I	CCNGG	2 cut(s)	207, 455
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	266, 299
NciI	CCSGG	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
NlaIII	CATG	8 cut(s)	220, 259, 307, 416, 439, 602, 653, 661
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	3 cut(s)	220, 416, 661
NspV	TTCGAA	1 cut(s)	234
PasI	CCCWGGG	1 cut(s)	206
PciI	ACATGT	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	347, 560
PmaCI	CACGTG	1 cut(s)	67
PmlI	CACGTG	1 cut(s)	67
PpsI	GAGTC	2 cut(s)	347, 560
Ppu21I	YACGTR	2 cut(s)	67, 427
PscI	ACATGT	1 cut(s)	216
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	205
PspCI	CACGTG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	205
RsaI	GTAC	3 cut(s)	77, 177, 417
RsaNI	GTAC	3 cut(s)	76, 176, 416
SalI	GTCGAC	1 cut(s)	580
SaqAI	TTAA	2 cut(s)	182, 533
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	6 cut(s)	195, 210, 363, 601, 612, 652
SchI	GAGTC	2 cut(s)	348, 561
ScrFI	CCNGG	2 cut(s)	207, 455
SduI	GDGCHC	2 cut(s)	573, 624
SetI	ASST	9 cut(s)	61, 69, 81, 87, 188, 275, 353, 361, 429
SfuI	TTCGAA	1 cut(s)	234
SgrDI	CGTCGACG	1 cut(s)	580
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	3 cut(s)	23, 90, 369
SsiI	CCGC	2 cut(s)	261, 318
SspMI	CTAG	2 cut(s)	296, 564
StyD4I	CCNGG	2 cut(s)	205, 453
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	7 cut(s)	43, 100, 328, 404, 545, 586, 637
TaiI	ACGT	5 cut(s)	61, 69, 87, 353, 429
TaqI	TCGA	4 cut(s)	234, 337, 581, 611
TasI	AATT	3 cut(s)	23, 90, 369
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	182, 533
Tru9I	TTAA	2 cut(s)	182, 533
TscAI	CASTG	3 cut(s)	13, 331, 384
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	99, 154, 424
TspRI	CASTG	3 cut(s)	13, 331, 384
XceI	RCATGY	3 cut(s)	220, 416, 661
XmiI	GTMKAC	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	2 cut(s)	296, 564
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.