FvH4_4g15650

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003635
Physical Location & Seq
Forward (+)
19510122 .. 19512036
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15650.t1

Sequence Viewer

Length: 438 bp
ATGTCTAGTAGTAAAGCTGAAGAACCTGTAAATGAGCAAGCAGTTGCAAATAAGTTTGCTGCCATGAGGTCTGAACTCAACCAAATTTACTCTAAAATCACTGAGCTAGAGATGGACGTGAGTGAGCACTCATTGGTGATCAATGCCATCCAGCCTCTTGATCCATCCAGGCGTTGCTTTCGAATGATTGGAGGTGTGCTGGTGGAGAGAACCATCAAGGAGGTCCTTCCTGCTGTGCAGCGTAACAAAGAAGGGATTGAGGAGGTTATAACTCGACTGAATGAGGCTTTGGAAAGGAAGAAAAAGGAAATTACTGAGTTTGAGGCCAAGTACAAGATTCGGATAAGAAAGAACGAGGGTGAGGAGAAGGATGATGGTGCTCGCAAAGAAGGAACTGCTCAAGGTGTCTTGGTAGGCCTTGCCGGTGGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

146

Amino Acids

16.24

Weight (kDa)

5.69

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 13 - 117 6.9e-27 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AclWI GGATC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 332
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 167
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 2 cut(s) 17, 106
AluI AGCT 2 cut(s) 17, 106
Alw21I GWGCWC 2 cut(s) 129, 382
AlwI GGATC 1 cut(s) 155
AoxI GGCC 2 cut(s) 324, 415
ApeKI GCWGC 2 cut(s) 59, 238
ApoI RAATTY 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 148, 371
AsuII TTCGAA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 129, 382
BbvI GCAGC 2 cut(s) 46, 250
BccI CCATC 5 cut(s) 106, 155, 172, 221, 368
BciT130I CCWGG 1 cut(s) 169
BclI TGATCA 1 cut(s) 138
BfaI CTAG 2 cut(s) 6, 107
BisI GCNGC 2 cut(s) 60, 239
BlsI GCNGC 2 cut(s) 61, 240
Bme1390I CCNGG 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 169
Bpu14I TTCGAA 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 384
Bse118I RCCGGY 1 cut(s) 422
BseBI CCWGG 1 cut(s) 169
BseGI GGATG 3 cut(s) 147, 164, 376
BseMII CTCAG 2 cut(s) 93, 306
BseRI GAGGAG 2 cut(s) 275, 377
BseXI GCAGC 2 cut(s) 46, 250
BsgI GTGCAG 1 cut(s) 257
BshFI GGCC 2 cut(s) 326, 417
BsiHKAI GWGCWC 2 cut(s) 129, 382
BsiSI CCGG 1 cut(s) 423
BsnI GGCC 2 cut(s) 326, 417
Bsp119I TTCGAA 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 129, 382
Bsp143I GATC 2 cut(s) 138, 160
BspANI GGCC 2 cut(s) 326, 417
BspCNI CTCAG 2 cut(s) 94, 307
BspPI GGATC 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 422
BssMI GATC 2 cut(s) 138, 160
Bst2UI CCWGG 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 39, 382
BstDEI CTNAG 2 cut(s) 102, 315
BstF5I GGATG 3 cut(s) 147, 164, 376
BstKTI GATC 2 cut(s) 141, 163
BstMBI GATC 2 cut(s) 138, 160
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 46, 250
BsuRI GGCC 2 cut(s) 326, 417
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 147, 164, 376
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 39, 382
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 64
CviJI RGCY 6 cut(s) 17, 106, 154, 287, 326, 417
CviKI_1 RGCY 6 cut(s) 17, 106, 154, 287, 326, 417
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 2 cut(s) 102, 315
DpnI GATC 2 cut(s) 140, 162
DpnII GATC 2 cut(s) 138, 160
Eco147I AGGCCT 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 269
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 60, 239
FokI GGATG 3 cut(s) 134, 151, 383
Fsp4HI GCNGC 2 cut(s) 60, 239
FspBI CTAG 2 cut(s) 6, 107
GluI GCNGC 2 cut(s) 60, 239
HaeIII GGCC 2 cut(s) 326, 417
HapII CCGG 1 cut(s) 423
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 423
HphI GGTGA 2 cut(s) 148, 371
Hpy188I TCNGA 2 cut(s) 73, 342
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 4 cut(s) 236, 245, 361, 383
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 47, 238
HpyF3I CTNAG 2 cut(s) 102, 315
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 2 cut(s) 138, 160
LpnPI CCDG 6 cut(s) 39, 154, 164, 181, 185, 243
Lsp1109I GCAGC 2 cut(s) 46, 250
MaeI CTAG 2 cut(s) 6, 107
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 140, 162
MboI GATC 2 cut(s) 138, 160
MboII GAAGA 2 cut(s) 32, 310
MhlI GDGCHC 2 cut(s) 129, 382
MluCI AATT 2 cut(s) 84, 309
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
NdeII GATC 2 cut(s) 138, 160
NlaIII CATG 1 cut(s) 67
NspV TTCGAA 1 cut(s) 181
PceI AGGCCT 1 cut(s) 417
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 2 cut(s) 61, 240
PpuMI RGGWCCY 1 cut(s) 223
PsiI TTATAA 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SatI GCNGC 2 cut(s) 60, 239
Sau3AI GATC 2 cut(s) 138, 160
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 2 cut(s) 129, 382
SetI ASST 9 cut(s) 19, 28, 71, 108, 120, 196, 225, 267, 406
SfuI TTCGAA 1 cut(s) 181
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 2 cut(s) 84, 309
SseBI AGGCCT 1 cut(s) 417
SspMI CTAG 2 cut(s) 6, 107
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 167
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 181, 274
TasI AATT 2 cut(s) 84, 309
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 337
TscAI CASTG 1 cut(s) 106
TseI GCWGC 2 cut(s) 59, 238
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 84
XspI CTAG 2 cut(s) 6, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.