RLG00000008012

prefoldin subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003635
Physical Location & Seq
Forward (+)
24244843 .. 24245284
442 bp
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UTR
Exon/CDS
Intron
RLM00000008012

Sequence Viewer

Length: 336 bp
ATGTCGAGTCGTAAAGCTGAAGAACCTGTAAATGAGCAAGCCGTTGCAAATAAGTTTGCTGCCATGAGGCGGTGCTTCCGAATGATTGGAGGTGTGCTGGTGGAGAGAACCATCAAGGAGGTCCTGCCTGCTGTGCAGCGTAACAAAGAAGGGATTGAGGAGGTTATTACTCGGCTGAATGAGGCTTTGGAAAGGAAGAAAAAAGAAATTTCTGACTTTGAGGCTAAGTACAAGATCCGGATAAGAAAGAATGACAGTGAGGAGAAGGATGATGGTGCTCGCAAAGAAGGAACTGCTCAAGGAGTCCTGGTCGGCCCTGCTGGTGGAAGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin_2

Protein Analysis

112

Amino Acids

12.43

Weight (kDa)

9.1

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin_2 PF01920 21 - 83 1.6e-13 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 69, 323
AjnI CCWGG 1 cut(s) 306
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 59, 136
ApoI RAATTY 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 121, 314
AvaII GGWCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 46, 148
BccI CCATC 2 cut(s) 119, 266
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 308
BisI GCNGC 2 cut(s) 60, 137
BlsI GCNGC 2 cut(s) 61, 138
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 314
BmrFI CCNGG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 323
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 69, 323
BseRI GAGGAG 2 cut(s) 173, 275
BseXI GCAGC 2 cut(s) 46, 148
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 69, 323
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 315
BspEI TCCGGA 1 cut(s) 237
BspPI GGATC 1 cut(s) 229
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 39, 129, 280
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 46, 148
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 3 cut(s) 39, 129, 280
Cfr13I GGNCC 2 cut(s) 121, 314
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 64
CviJI RGCY 6 cut(s) 17, 41, 175, 185, 224, 315
CviKI_1 RGCY 6 cut(s) 17, 41, 175, 185, 224, 315
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 60, 137
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 60, 137
GluI GCNGC 2 cut(s) 60, 137
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 238
Hin1II CATG 1 cut(s) 67
HinfI GANTC 2 cut(s) 7, 303
HpaII CCGG 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 80, 214
Hpy188III TCNNGA 1 cut(s) 238
HpyAV CCTTC 3 cut(s) 143, 259, 281
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 47, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 9 cut(s) 39, 83, 137, 141, 251, 293, 306, 320, 330
Lsp1109I GCAGC 2 cut(s) 46, 148
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 2 cut(s) 32, 208
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 1 cut(s) 207
MlyI GAGTC 2 cut(s) 16, 312
MnlI CCTC 8 cut(s) 60, 83, 112, 151, 154, 175, 214, 253
MroI TCCGGA 1 cut(s) 237
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 1 cut(s) 234
NlaIII CATG 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 151
PkrI GCNGC 2 cut(s) 61, 138
PleI GAGTC 2 cut(s) 15, 311
PpsI GAGTC 2 cut(s) 15, 311
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 2 cut(s) 121, 314
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SatI GCNGC 2 cut(s) 60, 137
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 2 cut(s) 121, 314
SchI GAGTC 2 cut(s) 16, 312
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 280
SetI ASST 5 cut(s) 19, 28, 94, 123, 165
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 207
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 207
TatI WGTACW 1 cut(s) 228
TscAI CASTG 1 cut(s) 262
TseI GCWGC 2 cut(s) 59, 136
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.