Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003635

Physical Location & Seq

Genomic Coordinates Forward (+)

1055755 .. 1058371

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G014300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCAGTAGTAAAGCTGAAGGAGATCAAAAGGAATATGTAAATGAGCAAGCAGTTGCAAATAAGTTTGCTGCTATGAGGTCAGAACTCAACCAAATTTACTCGAAAATCACTGAGCTAGAGATGGAAGCAAGCGAGCACTCGTTGGTCATCAGTGCCATCCAGCCCCTTGATCCATCCAGGCGATGCTACCGGATGATCGGAGGTGTGCTGGTGGAGAGAACAATCAAGGAGGTCCTGCCTGCTGTGCAGCGCAACAAAGAGGGGATTGAGGAGGTTATTGCTAGGCTGAATGAGGCATTGGAAAAGAAGAAAAAGGAAATTTCTGATTTTGAGGCCAAGTACAAGATCAAGATACGGAAGGAGCAGGGTGAGGAGAAGGACGATGGTGCTCGGAAAGAAGGGACTGCTCAAGGAGTCCTGGTTGGCCCTGCCGGTGGAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

150

Amino Acids

16.58

Weight (kDa)

5.7

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22480 AT3G22480
fragaria_vesca	FvH4_4g15650
malus_domestica	MD16G1194400.v1.1
prunus_persica	Prupe.1G014300_v2.0.a1 Prupe.1G014300_v2.0.a1
pyrus_communis	pycom13g16600 pycom16g16420
rosa_chinensis	RchiOBHm_Chr1g0362551 RchiOBHm_Chr4g0387021 RchiOBHm_Chr4g0416141
rosa_laevigata	RLG00000008012 RLG00000010149 RLG00000010151
rosa_multiflora	Rmu_sc0000750.1_g000017 Rmu_sc0001474.1_g000002 Rmu_sc0005725.1_g000004 Rmu_sc0015670.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293990 Rroxscaffold_5G00360000
rosa_rugosa	Rorug01G0298800 Rorug01G0298900 Rorug04G0139100
rosa_samantha	Rh1AG308100 Rh1BG270500 Rh1CG289000 Rh1DG300700 Rh4AG014200 Rh4AG201300 Rh4BG198500 Rh4CG212500 Rh4DG198700
rosa_wichuraiana	Rw1G004170 Rw1G027340 Rw4G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	96, 321
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	179, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	17, 118
AluI	AGCT	2 cut(s)	17, 118
Alw21I	GWGCWC	2 cut(s)	141, 394
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	3 cut(s)	3, 336, 427
ApeKI	GCWGC	2 cut(s)	71, 250
ApoI	RAATTY	2 cut(s)	96, 321
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	235, 428
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	141, 394
BbvI	GCAGC	2 cut(s)	58, 262
BccI	CCATC	4 cut(s)	118, 167, 184, 380
BciT130I	CCWGG	2 cut(s)	181, 422
BfaI	CTAG	2 cut(s)	119, 285
BisI	GCNGC	2 cut(s)	72, 251
BlsI	GCNGC	2 cut(s)	73, 252
Bme1390I	CCNGG	2 cut(s)	181, 422
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	235, 428
BmrFI	CCNGG	2 cut(s)	181, 422
BmsI	GCATC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	6
BseBI	CCWGG	2 cut(s)	181, 422
BseGI	GGATG	3 cut(s)	159, 176, 201
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	2 cut(s)	287, 389
BseXI	GCAGC	2 cut(s)	58, 262
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	5, 338, 429
BsiHKAI	GWGCWC	2 cut(s)	141, 394
BsiSI	CCGG	2 cut(s)	193, 435
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	5, 338, 429
Bsp1286I	GDGCHC	2 cut(s)	141, 394
Bsp143I	GATC	4 cut(s)	25, 172, 198, 348
BspANI	GGCC	3 cut(s)	5, 338, 429
BspCNI	CTCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	434
BssMI	GATC	4 cut(s)	25, 172, 198, 348
Bst2UI	CCWGG	2 cut(s)	181, 422
BstC8I	GCNNGC	4 cut(s)	51, 133, 137, 243
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	159, 176, 201
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	4 cut(s)	28, 175, 201, 351
BstMBI	GATC	4 cut(s)	25, 172, 198, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	2 cut(s)	181, 422
BstSCI	CCNGG	2 cut(s)	179, 420
BstV1I	GCAGC	2 cut(s)	58, 262
BsuRI	GGCC	3 cut(s)	5, 338, 429
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	159, 176, 201
BtsIMutI	CAGTG	2 cut(s)	111, 160
Cac8I	GCNNGC	4 cut(s)	51, 133, 137, 243
CfoI	GCGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	235, 428
Csp6I	GTAC	1 cut(s)	343
CviJI	RGCY	7 cut(s)	5, 17, 118, 166, 289, 338, 429
CviKI_1	RGCY	7 cut(s)	5, 17, 118, 166, 289, 338, 429
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	4 cut(s)	27, 174, 200, 350
DpnII	GATC	4 cut(s)	25, 172, 198, 348
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	179, 420
FaiI	YATR	2 cut(s)	39, 77
FaqI	GGGAC	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	72, 251
FokI	GGATG	3 cut(s)	146, 163, 208
Fsp4HI	GCNGC	2 cut(s)	72, 251
FspBI	CTAG	2 cut(s)	119, 285
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	72, 251
HaeIII	GGCC	3 cut(s)	5, 338, 429
HapII	CCGG	2 cut(s)	193, 435
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	417
HpaII	CCGG	2 cut(s)	193, 435
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	85, 203, 328, 396
Hpy188III	TCNNGA	1 cut(s)	352
HpyAV	CCTTC	4 cut(s)	14, 355, 373, 395
HpyCH4V	TGCA	2 cut(s)	59, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	114
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	25, 172, 198, 348
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	2 cut(s)	58, 262
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	119, 285
MalI	GATC	4 cut(s)	27, 174, 200, 350
MboI	GATC	4 cut(s)	25, 172, 198, 348
MboII	GAAGA	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	141, 394
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	96, 321
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	426
MnlI	CCTC	9 cut(s)	72, 197, 226, 256, 265, 268, 289, 328, 367
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	193, 435
MspR9I	CCNGG	2 cut(s)	181, 422
MvaI	CCWGG	2 cut(s)	181, 422
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	4 cut(s)	25, 172, 198, 348
PkrI	GCNGC	2 cut(s)	73, 252
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	179, 420
PspGI	CCWGG	2 cut(s)	179, 420
PspPI	GGNCC	2 cut(s)	235, 428
PspPPI	RGGWCCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SatI	GCNGC	2 cut(s)	72, 251
Sau3AI	GATC	4 cut(s)	25, 172, 198, 348
Sau96I	GGNCC	2 cut(s)	235, 428
SchI	GAGTC	1 cut(s)	426
ScrFI	CCNGG	2 cut(s)	181, 422
SduI	GDGCHC	2 cut(s)	141, 394
SetI	ASST	6 cut(s)	19, 83, 120, 208, 237, 279
SfaNI	GCATC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	2 cut(s)	96, 321
SspMI	CTAG	2 cut(s)	119, 285
StyD4I	CCNGG	2 cut(s)	179, 420
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	96, 321
TatI	WGTACW	1 cut(s)	342
TscAI	CASTG	2 cut(s)	118, 160
TseI	GCWGC	2 cut(s)	71, 250
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	2 cut(s)	118, 160
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	96, 321
XspI	CTAG	2 cut(s)	119, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.