Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000750.1

Orthogroup ID

OG0003635

Physical Location & Seq

Genomic Coordinates Reverse (-)

74009 .. 75988

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000750.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggctcatagatatgcagacattgctacttatgattatgttgatgatttctgtttaaatgagcttcccgcttttattcgagacgtgctttatgaggatcattgtattttttcacggggcttaggtcttataggctcgttcgcttccatcttcgccgcgacgctatacacccaccgtctccggcactctcgtctcccaaaaacaaccaatcagagagtcatgtctagtagtaaagctgaagaacctgtaaatgagcaagcagttgcaaataagtttgctgccatgaggtctgaactcaaccaaatttactctaaaatcactgagctagagatggacgtgagtgagcactcattggtgatcaatgccatccagccactcgacccatccaggcggtgcttccgaatgattggaggtgtgctggtggagagaaccatcaaggaggtcctgcctgctgtgcagcgtaacaaagaagggattgaggaggttattactcggctgaatgaggctttggaaaggaagaaaaaagaaatttctgactttgaggctaagtacaagatccggataagaaagaatgacagtgaggagaaggatgatggtgctcgcaaagaaggaactgctcaaggagtcctggtcggccctgctggtggaagcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0044183 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

218

Amino Acids

24.66

Weight (kDa)

6.26

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22480 AT3G22480
fragaria_vesca	FvH4_4g15650
malus_domestica	MD16G1194400.v1.1
prunus_persica	Prupe.1G014300_v2.0.a1 Prupe.1G014300_v2.0.a1
pyrus_communis	pycom13g16600 pycom16g16420
rosa_chinensis	RchiOBHm_Chr1g0362551 RchiOBHm_Chr4g0387021 RchiOBHm_Chr4g0416141
rosa_laevigata	RLG00000008012 RLG00000010149 RLG00000010151
rosa_multiflora	Rmu_sc0000750.1_g000017 Rmu_sc0001474.1_g000002 Rmu_sc0005725.1_g000004 Rmu_sc0015670.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293990 Rroxscaffold_5G00360000
rosa_rugosa	Rorug01G0298800 Rorug01G0298900 Rorug04G0139100
rosa_samantha	Rh1AG308100 Rh1BG270500 Rh1CG289000 Rh1DG300700 Rh4AG014200 Rh4AG201300 Rh4BG198500 Rh4CG212500 Rh4DG198700
rosa_wichuraiana	Rw1G004170 Rw1G027340 Rw4G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	558
AciI	CCGC	3 cut(s)	69, 156, 391
AclWI	GGATC	2 cut(s)	105, 550
AcsI	RAATTY	2 cut(s)	303, 528
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	644
AjiI	CACGTC	2 cut(s)	85, 337
AjnI	CCWGG	2 cut(s)	386, 627
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	3 cut(s)	64, 236, 325
AluI	AGCT	3 cut(s)	64, 236, 325
Alw21I	GWGCWC	2 cut(s)	348, 601
Alw26I	GTCTC	3 cut(s)	75, 182, 197
AlwI	GGATC	2 cut(s)	105, 550
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	1 cut(s)	634
ApeKI	GCWGC	2 cut(s)	278, 457
ApoI	RAATTY	2 cut(s)	303, 528
AspS9I	GGNCC	2 cut(s)	442, 635
AsuHPI	GGTGA	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	442
Bbv12I	GWGCWC	2 cut(s)	348, 601
BbvI	GCAGC	2 cut(s)	265, 469
BccI	CCATC	6 cut(s)	155, 325, 374, 391, 440, 587
BciT130I	CCWGG	2 cut(s)	388, 629
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	3 cut(s)	75, 182, 197
BfaI	CTAG	2 cut(s)	225, 326
BisI	GCNGC	3 cut(s)	156, 279, 458
BlsI	GCNGC	3 cut(s)	157, 280, 459
Bme1390I	CCNGG	2 cut(s)	388, 629
Bme18I	GGWCC	1 cut(s)	442
BmgBI	CACGTC	2 cut(s)	85, 337
BmgT120I	GGNCC	2 cut(s)	442, 635
BmrFI	CCNGG	2 cut(s)	388, 629
Bpu10I	CCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	21
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	388, 629
BseGI	GGATG	3 cut(s)	366, 383, 595
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	494, 596
BseXI	GCAGC	2 cut(s)	265, 469
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	636
BsiHKAI	GWGCWC	2 cut(s)	348, 601
BsiSI	CCGG	2 cut(s)	181, 559
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	3 cut(s)	75, 182, 197
BsmBI	CGTCTC	3 cut(s)	75, 182, 197
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	348, 601
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	97, 357, 555
BspACI	CCGC	3 cut(s)	69, 156, 391
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	1 cut(s)	313
BspEI	TCCGGA	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	158
BspPI	GGATC	2 cut(s)	105, 550
BsrDI	GCAATG	1 cut(s)	21
BssMI	GATC	3 cut(s)	97, 357, 555
Bst2UI	CCWGG	2 cut(s)	388, 629
Bst4CI	ACNGT	2 cut(s)	176, 578
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	258, 450, 601
BstDEI	CTNAG	3 cut(s)	121, 321, 546
BstF5I	GGATG	3 cut(s)	366, 383, 595
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	100, 360, 558
BstMAI	GTCTC	3 cut(s)	75, 182, 197
BstMBI	GATC	3 cut(s)	97, 357, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 454
BstNI	CCWGG	2 cut(s)	388, 629
BstSCI	CCNGG	2 cut(s)	386, 627
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	265, 469
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	636
BtrI	CACGTC	2 cut(s)	85, 337
BtsCI	GGATG	3 cut(s)	366, 383, 595
BtsIMutI	CAGTG	2 cut(s)	318, 583
Cac8I	GCNNGC	3 cut(s)	258, 450, 601
Cfr13I	GGNCC	2 cut(s)	442, 635
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	2 cut(s)	220, 283
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	3 cut(s)	121, 321, 546
DpnI	GATC	3 cut(s)	99, 359, 557
DpnII	GATC	3 cut(s)	97, 357, 555
DraI	TTTAAA	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	386, 627
Esp3I	CGTCTC	3 cut(s)	75, 182, 197
FaeI	CATG	2 cut(s)	223, 286
FaiI	YATR	9 cut(s)	9, 15, 33, 39, 93, 131, 166, 221, 284
FatI	CATG	2 cut(s)	219, 282
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	156, 279, 458
FokI	GGATG	3 cut(s)	353, 370, 602
Fsp4HI	GCNGC	3 cut(s)	156, 279, 458
FspBI	CTAG	2 cut(s)	225, 326
GluI	GCNGC	3 cut(s)	156, 279, 458
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	2 cut(s)	181, 559
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	223, 286
HinfI	GANTC	2 cut(s)	216, 624
HpaII	CCGG	2 cut(s)	181, 559
HphI	GGTGA	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	213, 292, 401, 535
Hpy188III	TCNNGA	2 cut(s)	80, 559
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	464, 580, 602
HpyCH4III	ACNGT	2 cut(s)	176, 578
HpyCH4IV	ACGT	2 cut(s)	84, 336
HpyCH4V	TGCA	3 cut(s)	17, 266, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 454
HpyF3I	CTNAG	3 cut(s)	121, 321, 546
HpySE526I	ACGT	2 cut(s)	84, 336
Hsp92II	CATG	2 cut(s)	223, 286
Kpn2I	TCCGGA	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	97, 357, 555
Lsp1109I	GCAGC	2 cut(s)	265, 469
MaeI	CTAG	2 cut(s)	225, 326
MaeII	ACGT	2 cut(s)	84, 336
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	3 cut(s)	99, 359, 557
MboI	GATC	3 cut(s)	97, 357, 555
MboII	GAAGA	3 cut(s)	142, 251, 529
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	348, 601
MluCI	AATT	2 cut(s)	303, 528
MlyI	GAGTC	2 cut(s)	225, 633
MnlI	CCTC	9 cut(s)	88, 279, 404, 433, 472, 475, 496, 535, 574
MroI	TCCGGA	1 cut(s)	558
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	181, 559
MspR9I	CCNGG	2 cut(s)	388, 629
MvaI	CCWGG	2 cut(s)	388, 629
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	23, 454
NdeII	GATC	3 cut(s)	97, 357, 555
NlaIII	CATG	2 cut(s)	223, 286
NmeAIII	GCCGAG	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	157, 280, 459
PleI	GAGTC	2 cut(s)	224, 632
PpsI	GAGTC	2 cut(s)	224, 632
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	386, 627
PspGI	CCWGG	2 cut(s)	386, 627
PspPI	GGNCC	2 cut(s)	442, 635
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	555
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	3 cut(s)	156, 279, 458
Sau3AI	GATC	3 cut(s)	97, 357, 555
Sau96I	GGNCC	2 cut(s)	442, 635
SchI	GAGTC	2 cut(s)	225, 633
ScrFI	CCNGG	2 cut(s)	388, 629
SduI	GDGCHC	2 cut(s)	348, 601
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse9I	AATT	2 cut(s)	303, 528
SsiI	CCGC	3 cut(s)	69, 156, 391
SspMI	CTAG	2 cut(s)	225, 326
StyD4I	CCNGG	2 cut(s)	386, 627
TaaI	ACNGT	2 cut(s)	176, 578
TaiI	ACGT	2 cut(s)	87, 339
TaqI	TCGA	2 cut(s)	79, 378
TasI	AATT	2 cut(s)	303, 528
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	325, 583
TseI	GCWGC	2 cut(s)	278, 457
TspRI	CASTG	2 cut(s)	325, 583
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	303, 528
XspI	CTAG	2 cut(s)	225, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.