Rh3CG372100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009731
Physical Location & Seq
Reverse (-)
47812297 .. 47817499
5203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG372100.1

Sequence Viewer

Length: 438 bp
ATGTTAATCTCAGTCATTTTATGGGGGAAGACCTCCAAGCCCTTAAGTATGAAAGAGCTTCAGATTTGGAGCAGCAACTTTACTCTGAAGCACATAAGATCTAGAAAGGGGACTAGAATAATGGGATTGGGTTTATGCTTTCAGCCAGGAAGAGTATTTCAAAGCTTATTATGCTGCTTTAAGAAAAATACGAGAAGAAGAAGCAGCAAAGAGTCGTCAGGTTGGCATGAAGTCAAAACTTCGAAGATGAAGAGCAAGATAATGTTGACTGTGAAGAGGCTCAGTTGCAGATGCATGAGAGCTTTCCAACTATTGACAAAAGGACATGCAATTCTCAAAAAGAGGCTCAAGGCTTATTTTCAGAATAAGGACAAGTATGATGTTAGAGATTCGTATGAGCAGAAAGCTAAGGAGAGTTCAAAGTCGATCAGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.93

Weight (kDa)

10.59

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 44, 107
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 161, 420
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 4 cut(s) 58, 165, 302, 407
AluI AGCT 4 cut(s) 58, 165, 302, 407
ApeKI GCWGC 3 cut(s) 72, 174, 204
AsuII TTCGAA 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 84, 161, 216
BciT130I CCWGG 1 cut(s) 147
BfaI CTAG 2 cut(s) 102, 114
BfrI CTTAAG 1 cut(s) 43
BglII AGATCT 1 cut(s) 98
BisI GCNGC 3 cut(s) 73, 175, 205
BlsI GCNGC 3 cut(s) 74, 176, 206
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 35
Bpu10I CCTNAGC 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 24, 295
BseXI GCAGC 3 cut(s) 84, 161, 216
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 242
Bsp143I GATC 2 cut(s) 98, 426
BspCNI CTCAG 2 cut(s) 23, 294
BspQI GCTCTTC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 43
BssMI GATC 2 cut(s) 98, 426
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 3 cut(s) 145, 245, 269
BstAFI CTTAAG 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 10, 281, 408
BstKTI GATC 2 cut(s) 101, 429
BstMBI GATC 2 cut(s) 98, 426
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 84, 161, 216
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
CviAII CATG 3 cut(s) 227, 295, 326
CviJI RGCY 9 cut(s) 40, 58, 145, 165, 280, 302, 346, 353, 407
CviKI_1 RGCY 9 cut(s) 40, 58, 145, 165, 280, 302, 346, 353, 407
DdeI CTNAG 3 cut(s) 10, 281, 408
DpnI GATC 2 cut(s) 100, 428
DpnII GATC 2 cut(s) 98, 426
Eam1104I CTCTTC 3 cut(s) 145, 245, 269
EarI CTCTTC 3 cut(s) 145, 245, 269
Eco57I CTGAAG 2 cut(s) 44, 107
EcoRII CCWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 296
FaeI CATG 3 cut(s) 230, 298, 329
FaqI GGGAC 1 cut(s) 124
FatI CATG 3 cut(s) 226, 294, 325
Fnu4HI GCNGC 3 cut(s) 73, 175, 205
Fsp4HI GCNGC 3 cut(s) 73, 175, 205
FspBI CTAG 2 cut(s) 102, 114
GluI GCNGC 3 cut(s) 73, 175, 205
Hin1II CATG 3 cut(s) 230, 298, 329
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 212, 389
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 63, 87, 363
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 288, 294, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 3 cut(s) 10, 281, 408
Hsp92II CATG 3 cut(s) 230, 298, 329
Kzo9I GATC 2 cut(s) 98, 426
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 3 cut(s) 132, 159, 204
Lsp1109I GCAGC 3 cut(s) 84, 161, 216
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 102, 114
MalI GATC 2 cut(s) 100, 428
MboI GATC 2 cut(s) 98, 426
MboII GAAGA 7 cut(s) 40, 162, 207, 210, 256, 262, 286
MflI RGATCY 1 cut(s) 98
MluCI AATT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 43, 270, 336
Mph1103I ATGCAT 1 cut(s) 296
MseI TTAA 3 cut(s) 5, 44, 180
MspCI CTTAAG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 2 cut(s) 98, 426
NlaIII CATG 3 cut(s) 230, 298, 329
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 1 cut(s) 329
NspV TTCGAA 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 3 cut(s) 74, 176, 206
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 3 cut(s) 5, 44, 180
SatI GCNGC 3 cut(s) 73, 175, 205
Sau3AI GATC 2 cut(s) 98, 426
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 147
SetI ASST 6 cut(s) 35, 60, 167, 223, 304, 409
SfaNI GCATC 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 43, 347
SmoI CTYRAG 2 cut(s) 43, 347
Sse9I AATT 1 cut(s) 330
SspMI CTAG 2 cut(s) 102, 114
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 242, 425
TasI AATT 1 cut(s) 330
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 3 cut(s) 5, 44, 180
Tru9I TTAA 3 cut(s) 5, 44, 180
TseI GCWGC 3 cut(s) 72, 174, 204
TspDTI ATGAA 3 cut(s) 65, 243, 263
Vha464I CTTAAG 1 cut(s) 43
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 329
XspI CTAG 2 cut(s) 102, 114
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.